Variant report

Variant	rs1078564
Chromosome Location	chr13:110353140-110353141
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:110342649..110345177-chr13:110351322..110353512,2	MCF-7	breast:
2	chr13:110352177..110356373-chr13:110357272..110361111,4	K562	blood:
3	chr13:110351496..110354241-chr13:110356886..110361111,4	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs58480612	1.00[EUR][1000 genomes]
rs61743905	1.00[EUR][1000 genomes]
rs7320328	1.00[CEU][hapmap]
rs74125764	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74125765	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051686	chr13:110283468-110362954	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1044855	chr13:110301572-110408608	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110347600-110356800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr13:110349000-110353800	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr13:110349600-110354000	Enhancers	Primary hematopoietic stem cells	blood
4	chr13:110349800-110353200	Enhancers	K562	blood
5	chr13:110350200-110353600	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr13:110350200-110353600	Enhancers	Monocytes-CD14+_RO01746	blood
7	chr13:110351600-110353200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr13:110351600-110353800	Enhancers	Duodenum Mucosa	Duodenum
9	chr13:110351800-110353600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr13:110352000-110353200	Enhancers	Primary B cells from cord blood	blood
11	chr13:110352000-110353200	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr13:110352000-110353200	Enhancers	Fetal Intestine Large	intestine
13	chr13:110352000-110353200	Enhancers	Fetal Intestine Small	intestine
14	chr13:110352200-110353200	Enhancers	Primary T cells from cord blood	blood
15	chr13:110352200-110353200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr13:110352400-110353200	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr13:110352400-110355000	Enhancers	Dnd41	blood
18	chr13:110352400-110357600	Weak transcription	Colonic Mucosa	Colon
19	chr13:110352600-110353200	Enhancers	Fetal Thymus	thymus
20	chr13:110352800-110353200	Enhancers	Fetal Lung	lung
21	chr13:110352800-110356800	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr13:110352800-110356800	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr13:110352800-110356800	Weak transcription	A549	lung
24	chr13:110352800-110357400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr13:110352800-110357600	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr13:110352800-110357600	Weak transcription	HMEC	breast
27	chr13:110353000-110353400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr13:110353000-110356200	Weak transcription	Primary neutrophils fromperipheralblood	blood
29	chr13:110353000-110357600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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