Variant report

Variant	rs58480612
Chromosome Location	chr13:110351977-110351978
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:110342649..110345177-chr13:110351322..110353512,2	MCF-7	breast:
2	chr13:110350767..110352519-chr13:110358277..110361113,2	MCF-7	breast:
3	chr13:110351496..110354241-chr13:110356886..110361111,4	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1078564	1.00[EUR][1000 genomes]
rs61743905	1.00[EUR][1000 genomes]
rs74125764	1.00[EUR][1000 genomes]
rs74125765	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051686	chr13:110283468-110362954	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1044855	chr13:110301572-110408608	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110341000-110352000	Weak transcription	Fetal Intestine Small	intestine
2	chr13:110347600-110356800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr13:110347800-110352000	Weak transcription	Stomach Mucosa	stomach
4	chr13:110349000-110353000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr13:110349000-110353800	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr13:110349600-110354000	Enhancers	Primary hematopoietic stem cells	blood
7	chr13:110349800-110353000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr13:110349800-110353200	Enhancers	K562	blood
9	chr13:110350000-110353000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr13:110350200-110353000	Enhancers	HSMM	muscle
11	chr13:110350200-110353600	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr13:110350200-110353600	Enhancers	Monocytes-CD14+_RO01746	blood
13	chr13:110350400-110353000	Enhancers	Primary neutrophils fromperipheralblood	blood
14	chr13:110350600-110353000	Enhancers	Muscle Satellite Cultured Cells	--
15	chr13:110350800-110352000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr13:110350800-110352200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr13:110351000-110352200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr13:110351000-110352800	Enhancers	HMEC	breast
19	chr13:110351000-110352800	Enhancers	NH-A	brain
20	chr13:110351200-110352200	Enhancers	Adipose Nuclei	Adipose
21	chr13:110351200-110352200	Genic enhancers	Dnd41	blood
22	chr13:110351200-110352400	Weak transcription	NHEK	skin
23	chr13:110351400-110352000	Enhancers	NHDF-Ad	bronchial
24	chr13:110351600-110352200	Enhancers	Small Intestine	intestine
25	chr13:110351600-110352800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
26	chr13:110351600-110353200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr13:110351600-110353800	Enhancers	Duodenum Mucosa	Duodenum
28	chr13:110351800-110352000	Enhancers	Rectal Mucosa Donor 29	rectum
29	chr13:110351800-110352200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr13:110351800-110352400	Enhancers	Colonic Mucosa	Colon
31	chr13:110351800-110352800	Enhancers	Left Ventricle	heart
32	chr13:110351800-110352800	Enhancers	Rectal Mucosa Donor 31	rectum
33	chr13:110351800-110352800	Enhancers	Sigmoid Colon	Sigmoid Colon
34	chr13:110351800-110353600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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