Variant report

Variant	rs10785952
Chromosome Location	chr10:92048792-92048793
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:92048060..92049321-chr10:92352261..92353257,6	MCF-7	breast:
2	chr10:92046589..92049031-chr10:92410934..92413664,2	MCF-7	breast:
3	chr10:92047473..92050346-chr10:92165247..92168101,3	MCF-7	breast:
4	chr10:92047856..92048792-chr10:92412267..92413265,3	MCF-7	breast:
5	chr10:91908451..91909024-chr10:92048226..92048868,2	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10509598	0.96[ASN][1000 genomes]
rs12761749	1.00[ASN][1000 genomes]
rs12762729	0.83[ASN][1000 genomes]
rs12772587	0.83[ASN][1000 genomes]
rs12778542	1.00[ASN][1000 genomes]
rs12778920	1.00[ASN][1000 genomes]
rs12779366	0.96[ASN][1000 genomes]
rs12779831	0.96[ASN][1000 genomes]
rs12779981	1.00[ASN][1000 genomes]
rs12784961	0.96[ASN][1000 genomes]
rs1887183	1.00[ASN][1000 genomes]
rs1887184	1.00[ASN][1000 genomes]
rs1887185	1.00[ASN][1000 genomes]
rs1887186	1.00[ASN][1000 genomes]
rs2419666	0.87[ASN][1000 genomes]
rs4994943	1.00[ASN][1000 genomes]
rs4994945	1.00[ASN][1000 genomes]
rs4994946	1.00[ASN][1000 genomes]
rs7087199	0.91[ASN][1000 genomes]
rs7896252	1.00[ASN][1000 genomes]
rs7905038	1.00[ASN][1000 genomes]
rs7907215	1.00[ASN][1000 genomes]
rs7919251	1.00[ASN][1000 genomes]
rs7919262	1.00[ASN][1000 genomes]
rs7922885	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895883	chr10:91610601-92195828	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1039731	chr10:91645718-92198264	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv540743	chr10:91645718-92198264	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv467430	chr10:91681344-92297943	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv551875	chr10:91681344-92297943	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	esv3375393	chr10:91880933-92243227	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	esv2422237	chr10:91940542-92547558	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10785952	RBP4	cis	parietal	SCAN

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92048200-92049800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr10:92048200-92053600	Weak transcription	Fetal Intestine Small	intestine
3	chr10:92048400-92049000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr10:92048400-92049000	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr10:92048400-92049000	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr10:92048400-92049000	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr10:92048400-92049200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr10:92048400-92049400	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr10:92048400-92049400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr10:92048400-92049400	Enhancers	Muscle Satellite Cultured Cells	--
11	chr10:92048400-92049400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr10:92048400-92049400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr10:92048400-92049400	Enhancers	GM12878-XiMat	blood
14	chr10:92048400-92049400	Enhancers	NHEK	skin
15	chr10:92048400-92049400	Enhancers	NHLF	lung
16	chr10:92048400-92049800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr10:92048400-92049800	Enhancers	Osteobl	bone
18	chr10:92048400-92050200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr10:92048400-92051400	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr10:92048600-92048800	Enhancers	H1 Cell Line	embryonic stem cell
21	chr10:92048600-92048800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
22	chr10:92048600-92049000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
23	chr10:92048600-92049200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr10:92048600-92049200	Enhancers	Left Ventricle	heart
25	chr10:92048600-92049200	Enhancers	Skeletal Muscle Female	skeletal muscle
26	chr10:92048600-92049200	Enhancers	HUVEC	blood vessel
27	chr10:92048600-92049400	Enhancers	Primary hematopoietic stem cells short term culture	blood
28	chr10:92048600-92049400	Enhancers	Adipose Nuclei	Adipose
29	chr10:92048600-92049400	Enhancers	Fetal Muscle Leg	muscle
30	chr10:92048600-92049400	Enhancers	HMEC	breast
31	chr10:92048600-92049400	Enhancers	NH-A	brain
32	chr10:92048600-92049800	Weak transcription	HUES48 Cell Line	embryonic stem cell
33	chr10:92048600-92053400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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