Variant report

Variant	rs10786036
Chromosome Location	chr10:94083746-94083747
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:94083514..94086309-chr10:94087517..94090496,2	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10882029	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs10882034	0.82[CHB][hapmap];0.95[JPT][hapmap];0.84[YRI][hapmap]
rs10882039	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes]
rs11186848	0.83[CHB][hapmap];0.95[JPT][hapmap];0.85[YRI][hapmap]
rs11186851	0.82[CHB][hapmap];0.95[JPT][hapmap]
rs11186869	0.82[AMR][1000 genomes]
rs11186872	0.82[CHB][hapmap];0.95[JPT][hapmap];0.84[YRI][hapmap]
rs12256461	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12412346	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3740302	0.82[AMR][1000 genomes]
rs4933721	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7085368	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7089099	0.82[AFR][1000 genomes]
rs7098170	0.82[CHB][hapmap];0.95[JPT][hapmap]
rs730075	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7917088	0.82[CHB][hapmap];0.95[JPT][hapmap]
rs932820	0.82[CHB][hapmap];0.95[JPT][hapmap]
rs9804247	0.82[CHB][hapmap];0.95[JPT][hapmap];0.84[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv975763	chr10:93822289-94105956	Enhancers Bivalent Enhancer Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94052000-94111800	Weak transcription	Gastric	stomach
2	chr10:94052200-94109400	Weak transcription	Esophagus	oesophagus
3	chr10:94052400-94101200	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr10:94052400-94101600	Weak transcription	Rectal Smooth Muscle	rectum
5	chr10:94052400-94108800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr10:94052400-94114600	Weak transcription	Colonic Mucosa	Colon
7	chr10:94052600-94102000	Weak transcription	NHLF	lung
8	chr10:94052600-94109400	Weak transcription	HSMMtube	muscle
9	chr10:94052800-94087400	Weak transcription	K562	blood
10	chr10:94052800-94088600	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr10:94053200-94086800	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr10:94053400-94109400	Weak transcription	Fetal Brain Male	brain
13	chr10:94054600-94101400	Weak transcription	HSMM	muscle
14	chr10:94054800-94087200	Weak transcription	NHEK	skin
15	chr10:94056800-94087600	Weak transcription	A549	lung
16	chr10:94063600-94109400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr10:94063600-94111800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr10:94064000-94087600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr10:94064000-94087800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr10:94064000-94101400	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr10:94064000-94109200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr10:94064200-94086400	Weak transcription	Fetal Heart	heart
23	chr10:94065800-94093000	Weak transcription	Psoas Muscle	Psoas
24	chr10:94066000-94087400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr10:94066200-94101600	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr10:94067000-94089600	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr10:94067000-94113400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr10:94068400-94087600	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr10:94068600-94089800	Weak transcription	Small Intestine	intestine
30	chr10:94070800-94094800	Weak transcription	Colon Smooth Muscle	Colon
31	chr10:94071800-94108200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr10:94072000-94086800	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr10:94072000-94102200	Weak transcription	NHDF-Ad	bronchial
34	chr10:94072200-94087200	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr10:94072200-94088000	Weak transcription	HUVEC	blood vessel
36	chr10:94072200-94109000	Weak transcription	Brain Anterior Caudate	brain
37	chr10:94072200-94109400	Weak transcription	Aorta	Aorta
38	chr10:94072400-94089800	Weak transcription	HUES48 Cell Line	embryonic stem cell
39	chr10:94072400-94101600	Weak transcription	NH-A	brain
40	chr10:94072600-94087200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr10:94072600-94087200	Weak transcription	HMEC	breast
42	chr10:94072600-94094800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr10:94072800-94086400	Weak transcription	Primary neutrophils fromperipheralblood	blood
44	chr10:94072800-94087400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr10:94072800-94101200	Weak transcription	H1 Cell Line	embryonic stem cell
46	chr10:94073000-94087200	Weak transcription	Duodenum Smooth Muscle	Duodenum
47	chr10:94073000-94087400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr10:94073000-94090000	Weak transcription	HUES64 Cell Line	embryonic stem cell
49	chr10:94073000-94101800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr10:94073600-94101600	Weak transcription	Spleen	Spleen

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