Variant report

Variant	rs3740302
Chromosome Location	chr10:93999562-93999563
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:93969866..93972797-chr10:93997351..93999951,2	MCF-7	breast:
2	chr10:93998891..94002756-chr10:94046633..94048810,3	MCF-7	breast:
3	chr10:93997153..94001150-chr10:94050454..94053150,4	K562	blood:
4	chr10:93993398..93996089-chr10:93999200..94001184,3	K562	blood:
5	chr10:93997118..94002694-chr10:94002870..94008304,8	K562	blood:
6	chr10:93995692..93998257-chr10:93998323..94000901,2	MCF-7	breast:
7	chr10:93998311..94000738-chr10:94062996..94065016,2	K562	blood:
8	chr10:93997685..94001511-chr10:94048071..94053185,6	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000198060	Chromatin interaction
ENSG00000107864	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10786036	0.82[AMR][1000 genomes]
rs10882029	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10882034	0.92[ASN][1000 genomes]
rs10882035	0.93[ASN][1000 genomes]
rs10882036	0.93[ASN][1000 genomes]
rs10882039	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882043	0.85[ASN][1000 genomes]
rs11186840	0.85[ASN][1000 genomes]
rs11186848	0.90[ASN][1000 genomes]
rs11186851	0.92[ASN][1000 genomes]
rs11186862	0.93[ASN][1000 genomes]
rs11186869	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186872	0.94[ASN][1000 genomes]
rs12246924	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12256461	0.82[AMR][1000 genomes]
rs2011483	0.81[ASN][1000 genomes]
rs56072007	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57381242	0.93[ASN][1000 genomes]
rs59386062	0.90[ASN][1000 genomes]
rs66521023	0.92[ASN][1000 genomes]
rs66882667	0.87[ASN][1000 genomes]
rs7073372	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7080101	0.86[ASN][1000 genomes]
rs7080731	0.90[ASN][1000 genomes]
rs7085368	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7098170	0.87[ASN][1000 genomes]
rs730075	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7900400	0.85[ASN][1000 genomes]
rs7917088	0.93[ASN][1000 genomes]
rs932820	0.86[ASN][1000 genomes]
rs9804247	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv975763	chr10:93822289-94105956	Enhancers Bivalent Enhancer Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93997000-94003400	Active TSS	Right Atrium	heart
2	chr10:93997400-94001200	Active TSS	Pancreatic Islets	Pancreatic Islet
3	chr10:93997400-94003200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
4	chr10:93997800-93999800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
5	chr10:93997800-94000000	Flanking Active TSS	NHEK	skin
6	chr10:93997800-94001200	Active TSS	Esophagus	oesophagus
7	chr10:93997800-94002400	Active TSS	Left Ventricle	heart
8	chr10:93998000-94000200	Flanking Active TSS	HMEC	breast
9	chr10:93998000-94001000	Active TSS	Duodenum Smooth Muscle	Duodenum
10	chr10:93998000-94001200	Active TSS	Pancreas	Pancrea
11	chr10:93998000-94001400	Flanking Active TSS	Adipose Nuclei	Adipose
12	chr10:93998000-94003400	Active TSS	Psoas Muscle	Psoas
13	chr10:93998200-93999600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
14	chr10:93998200-93999800	Flanking Active TSS	GM12878-XiMat	blood
15	chr10:93998200-94000600	Active TSS	Fetal Adrenal Gland	Adrenal Gland
16	chr10:93998200-94001200	Active TSS	Ovary	ovary
17	chr10:93998200-94003400	Active TSS	Brain Inferior Temporal Lobe	brain
18	chr10:93998200-94003400	Active TSS	Right Ventricle	heart
19	chr10:93998400-93999600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
20	chr10:93998400-94001000	Active TSS	Fetal Kidney	kidney
21	chr10:93998600-93999600	Flanking Active TSS	Stomach Smooth Muscle	stomach
22	chr10:93998600-94000200	Active TSS	Primary T cells from cord blood	blood
23	chr10:93998600-94000600	Active TSS	Rectal Smooth Muscle	rectum
24	chr10:93998800-94000000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr10:93998800-94000200	Flanking Active TSS	Primary B cells from cord blood	blood
26	chr10:93998800-94000400	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
27	chr10:93998800-94000800	Active TSS	Gastric	stomach
28	chr10:93998800-94001000	Active TSS	Brain Hippocampus Middle	brain
29	chr10:93998800-94001200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
30	chr10:93998800-94001400	Active TSS	HSMMtube	muscle
31	chr10:93998800-94003400	Active TSS	Brain Angular Gyrus	brain
32	chr10:93999000-93999600	Flanking Bivalent TSS/Enh	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr10:93999000-93999600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr10:93999000-93999600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
35	chr10:93999000-93999600	Flanking Active TSS	Lung	lung
36	chr10:93999000-93999800	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr10:93999000-94000000	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr10:93999000-94000000	Flanking Bivalent TSS/Enh	ES-UCSF4 Cell Line	embryonic stem cell
39	chr10:93999000-94000200	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
40	chr10:93999000-94000200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr10:93999000-94000200	Active TSS	HepG2	liver
42	chr10:93999000-94000400	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
43	chr10:93999000-94000800	Active TSS	Colon Smooth Muscle	Colon
44	chr10:93999000-94001000	Active TSS	Brain Cingulate Gyrus	brain
45	chr10:93999000-94001000	Active TSS	Fetal Intestine Large	intestine
46	chr10:93999000-94001000	Active TSS	Fetal Stomach	stomach
47	chr10:93999000-94001000	Active TSS	Sigmoid Colon	Sigmoid Colon
48	chr10:93999000-94001000	Active TSS	Stomach Mucosa	stomach
49	chr10:93999000-94001200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr10:93999000-94001200	Active TSS	Aorta	Aorta

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