Variant report

Variant	rs10882036
Chromosome Location	chr10:93970803-93970804
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:93967344..93971211-chr10:94049163..94052466,3	MCF-7	breast:
2	chr10:93969866..93972797-chr10:93997351..93999951,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000198060	Chromatin interaction
ENSG00000107864	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10882029	0.93[ASN][1000 genomes]
rs10882034	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10882035	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882039	0.93[ASN][1000 genomes]
rs10882043	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11186840	0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11186848	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11186851	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11186862	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186869	0.93[ASN][1000 genomes]
rs11186872	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12246924	0.93[ASN][1000 genomes]
rs2011483	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3740302	0.93[ASN][1000 genomes]
rs56072007	0.94[ASN][1000 genomes]
rs57381242	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59386062	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66521023	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs66882667	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7073372	0.93[ASN][1000 genomes]
rs7080101	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7080731	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7098170	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs730075	0.82[ASN][1000 genomes]
rs7900400	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7917088	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs932820	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9804247	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv975763	chr10:93822289-94105956	Enhancers Bivalent Enhancer Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	esv2761614	chr10:93960695-93981177	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93926400-93976000	Weak transcription	Stomach Smooth Muscle	stomach
2	chr10:93926600-93976000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr10:93926800-93982400	Weak transcription	HSMMtube	muscle
4	chr10:93927200-93980400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr10:93927400-93997800	Weak transcription	Fetal Intestine Large	intestine
6	chr10:93929200-93984800	Weak transcription	Fetal Intestine Small	intestine
7	chr10:93934200-93976200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr10:93940200-93971200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr10:93941800-93971200	Weak transcription	Primary B cells from peripheral blood	blood
10	chr10:93958400-93981000	Weak transcription	Psoas Muscle	Psoas
11	chr10:93959000-93985800	Weak transcription	Brain Substantia Nigra	brain
12	chr10:93960800-93976000	Weak transcription	Gastric	stomach
13	chr10:93961000-93990800	Weak transcription	Spleen	Spleen
14	chr10:93961600-93972200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr10:93962000-93976400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr10:93963000-93976400	Weak transcription	Aorta	Aorta
17	chr10:93964200-93976200	Weak transcription	Right Ventricle	heart
18	chr10:93964200-93993000	Weak transcription	Fetal Brain Female	brain
19	chr10:93964200-93996000	Weak transcription	Brain Germinal Matrix	brain
20	chr10:93964200-93997600	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr10:93964400-93982400	Weak transcription	HSMM	muscle
22	chr10:93966400-93986200	Weak transcription	Ovary	ovary
23	chr10:93967400-93986200	Weak transcription	Fetal Heart	heart
24	chr10:93967600-93986200	Weak transcription	Left Ventricle	heart
25	chr10:93967600-93990800	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr10:93967800-93971200	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr10:93968200-93971000	Weak transcription	Adipose Nuclei	Adipose
28	chr10:93968400-93997000	Weak transcription	Primary neutrophils fromperipheralblood	blood
29	chr10:93968600-93989200	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr10:93968800-93978000	Weak transcription	Colon Smooth Muscle	Colon
31	chr10:93968800-93979400	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr10:93969000-93971000	Weak transcription	Brain Anterior Caudate	brain
33	chr10:93969000-93971200	Weak transcription	Primary monocytes fromperipheralblood	blood
34	chr10:93969200-93982400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr10:93969200-93997800	Weak transcription	Pancreas	Pancrea
36	chr10:93969200-93998600	Weak transcription	Lung	lung
37	chr10:93969600-93971200	Weak transcription	Right Atrium	heart
38	chr10:93969600-93997800	Weak transcription	Esophagus	oesophagus
39	chr10:93969800-93971000	Enhancers	HUVEC	blood vessel
40	chr10:93969800-93971600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr10:93970000-93971200	Enhancers	Brain Hippocampus Middle	brain
42	chr10:93970000-93971400	Enhancers	Hela-S3	cervix
43	chr10:93970000-93974200	Enhancers	GM12878-XiMat	blood
44	chr10:93970600-93971000	Enhancers	Monocytes-CD14+_RO01746	blood
45	chr10:93970600-93971200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
46	chr10:93970600-93971400	Enhancers	Stomach Mucosa	stomach
47	chr10:93970800-93971000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
48	chr10:93970800-93971000	Weak transcription	Brain Angular Gyrus	brain
49	chr10:93970800-93971000	Enhancers	Duodenum Mucosa	Duodenum
50	chr10:93970800-93971000	Enhancers	Fetal Stomach	stomach

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