Variant report

Variant	rs10786213
Chromosome Location	chr10:97216354-97216355
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97196672..97199755-chr10:97214969..97217951,3	K562	blood:
2	chr10:97208296..97210918-chr10:97214931..97216781,2	K562	blood:

Extended variants
information (count: 2 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs7074761	0.84[ASW][hapmap];0.87[LWK][hapmap];0.88[MKK][hapmap];0.85[YRI][hapmap];0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045002	chr10:97214418-97250630	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10786213	LOXL4	cis	cerebellum	SCAN
rs10786213	C10orf62	cis	parietal	SCAN

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97206000-97217000	Weak transcription	Gastric	stomach
2	chr10:97206000-97220000	Enhancers	Rectal Smooth Muscle	rectum
3	chr10:97206200-97219000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr10:97208200-97219000	Weak transcription	Ovary	ovary
5	chr10:97208200-97219000	Weak transcription	HSMMtube	muscle
6	chr10:97208600-97216600	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr10:97209200-97219200	Weak transcription	Fetal Muscle Trunk	muscle
8	chr10:97210000-97219400	Enhancers	Colon Smooth Muscle	Colon
9	chr10:97211200-97216600	Weak transcription	Brain Hippocampus Middle	brain
10	chr10:97211200-97217400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr10:97211400-97219000	Weak transcription	Brain Angular Gyrus	brain
12	chr10:97211400-97219000	Weak transcription	Brain Germinal Matrix	brain
13	chr10:97211600-97217000	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr10:97211800-97217000	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr10:97211800-97219000	Weak transcription	Fetal Muscle Leg	muscle
16	chr10:97212200-97216600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr10:97212200-97219000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr10:97212800-97217400	Weak transcription	Right Atrium	heart
19	chr10:97213000-97217200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr10:97213200-97234200	Weak transcription	Colonic Mucosa	Colon
21	chr10:97213600-97219000	Weak transcription	Psoas Muscle	Psoas
22	chr10:97213800-97219800	Enhancers	Brain Anterior Caudate	brain
23	chr10:97213800-97219800	Enhancers	Duodenum Smooth Muscle	Duodenum
24	chr10:97214200-97219000	Enhancers	Breast Myoepithelial Primary Cells	Breast
25	chr10:97214400-97216800	Weak transcription	Brain Substantia Nigra	brain
26	chr10:97214400-97219000	Enhancers	Fetal Heart	heart
27	chr10:97214600-97219000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr10:97214800-97216600	Enhancers	HepG2	liver
29	chr10:97215200-97219600	Enhancers	Fetal Brain Male	brain
30	chr10:97215400-97218000	Enhancers	Skeletal Muscle Female	skeletal muscle
31	chr10:97215400-97219800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
32	chr10:97215400-97219800	Enhancers	Fetal Brain Female	brain
33	chr10:97215600-97216800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr10:97215600-97217200	Enhancers	Right Ventricle	heart
35	chr10:97215600-97219800	Enhancers	Liver	Liver
36	chr10:97215800-97216400	Genic enhancers	Stomach Smooth Muscle	stomach
37	chr10:97215800-97216600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr10:97215800-97216800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr10:97215800-97216800	Enhancers	HMEC	breast
40	chr10:97215800-97217000	Enhancers	Fetal Kidney	kidney
41	chr10:97215800-97218000	Enhancers	Fetal Intestine Large	intestine
42	chr10:97215800-97218000	Enhancers	Fetal Intestine Small	intestine
43	chr10:97215800-97219000	Enhancers	Fetal Lung	lung
44	chr10:97215800-97219200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
45	chr10:97216000-97216800	Enhancers	NHEK	skin
46	chr10:97216000-97217000	Strong transcription	Aorta	Aorta
47	chr10:97216000-97218400	Enhancers	Brain Cingulate Gyrus	brain
48	chr10:97216000-97223000	Weak transcription	Pancreas	Pancrea
49	chr10:97216000-97226800	Weak transcription	Duodenum Mucosa	Duodenum
50	chr10:97216000-97228200	Enhancers	Cortex derived primary cultured neurospheres	brain

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