Variant report

Variant	rs7074761
Chromosome Location	chr10:97215930-97215931
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97196672..97199755-chr10:97214969..97217951,3	K562	blood:
2	chr10:97208296..97210918-chr10:97214931..97216781,2	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10786213	0.84[ASW][hapmap];0.87[LWK][hapmap];0.88[MKK][hapmap];0.85[YRI][hapmap];0.82[AFR][1000 genomes]
rs2148892	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2274491	0.94[CHB][hapmap];0.89[JPT][hapmap];0.86[ASN][1000 genomes]
rs4918930	0.86[ASN][1000 genomes]
rs4918937	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs533232	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs540746	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs549062	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.93[TSI][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs554765	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs557941	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs564370	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7094140	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7899065	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7913557	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7913770	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];0.81[MEX][hapmap];0.93[TSI][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs815313	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045002	chr10:97214418-97250630	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97206000-97217000	Weak transcription	Gastric	stomach
2	chr10:97206000-97220000	Enhancers	Rectal Smooth Muscle	rectum
3	chr10:97206200-97219000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr10:97208000-97216000	Weak transcription	Brain Cingulate Gyrus	brain
5	chr10:97208200-97216200	Weak transcription	Lung	lung
6	chr10:97208200-97219000	Weak transcription	Ovary	ovary
7	chr10:97208200-97219000	Weak transcription	HSMMtube	muscle
8	chr10:97208600-97216600	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr10:97209200-97219200	Weak transcription	Fetal Muscle Trunk	muscle
10	chr10:97210000-97219400	Enhancers	Colon Smooth Muscle	Colon
11	chr10:97211200-97216600	Weak transcription	Brain Hippocampus Middle	brain
12	chr10:97211200-97217400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr10:97211400-97219000	Weak transcription	Brain Angular Gyrus	brain
14	chr10:97211400-97219000	Weak transcription	Brain Germinal Matrix	brain
15	chr10:97211600-97217000	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr10:97211800-97217000	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr10:97211800-97219000	Weak transcription	Fetal Muscle Leg	muscle
18	chr10:97212200-97216000	Weak transcription	NHEK	skin
19	chr10:97212200-97216200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr10:97212200-97216200	Weak transcription	Fetal Stomach	stomach
21	chr10:97212200-97216600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr10:97212200-97219000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr10:97212800-97216000	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr10:97212800-97216200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr10:97212800-97217400	Weak transcription	Right Atrium	heart
26	chr10:97213000-97216200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr10:97213000-97217200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr10:97213200-97234200	Weak transcription	Colonic Mucosa	Colon
29	chr10:97213600-97219000	Weak transcription	Psoas Muscle	Psoas
30	chr10:97213800-97219800	Enhancers	Brain Anterior Caudate	brain
31	chr10:97213800-97219800	Enhancers	Duodenum Smooth Muscle	Duodenum
32	chr10:97214200-97219000	Enhancers	Breast Myoepithelial Primary Cells	Breast
33	chr10:97214400-97216200	Weak transcription	Left Ventricle	heart
34	chr10:97214400-97216800	Weak transcription	Brain Substantia Nigra	brain
35	chr10:97214400-97219000	Enhancers	Fetal Heart	heart
36	chr10:97214600-97219000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr10:97214800-97216600	Enhancers	HepG2	liver
38	chr10:97215200-97216000	Weak transcription	Aorta	Aorta
39	chr10:97215200-97219600	Enhancers	Fetal Brain Male	brain
40	chr10:97215400-97216000	Enhancers	Pancreas	Pancrea
41	chr10:97215400-97218000	Enhancers	Skeletal Muscle Female	skeletal muscle
42	chr10:97215400-97219800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
43	chr10:97215400-97219800	Enhancers	Fetal Brain Female	brain
44	chr10:97215600-97216800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr10:97215600-97217200	Enhancers	Right Ventricle	heart
46	chr10:97215600-97219800	Enhancers	Liver	Liver
47	chr10:97215800-97216000	Enhancers	Duodenum Mucosa	Duodenum
48	chr10:97215800-97216200	Enhancers	Skeletal Muscle Male	skeletal muscle
49	chr10:97215800-97216400	Genic enhancers	Stomach Smooth Muscle	stomach
50	chr10:97215800-97216600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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