Variant report

Variant	rs554765
Chromosome Location	chr10:97222664-97222665
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97220624..97225860-chr10:97227541..97231131,6	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs2148892	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2274491	0.81[CEU][hapmap];0.94[CHB][hapmap];0.89[JPT][hapmap];0.85[ASN][1000 genomes]
rs4918930	0.85[ASN][1000 genomes]
rs4918937	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs533232	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs540746	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs549062	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs557941	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs564370	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7074761	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7094140	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7899065	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7913557	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7913770	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs815313	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045002	chr10:97214418-97250630	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97213200-97234200	Weak transcription	Colonic Mucosa	Colon
2	chr10:97216000-97223000	Weak transcription	Pancreas	Pancrea
3	chr10:97216000-97226800	Weak transcription	Duodenum Mucosa	Duodenum
4	chr10:97216000-97228200	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr10:97217600-97223000	Weak transcription	Placenta	Placenta
6	chr10:97217600-97223000	Weak transcription	Gastric	stomach
7	chr10:97218000-97229600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr10:97219000-97223200	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr10:97219200-97223000	Weak transcription	Lung	lung
10	chr10:97219600-97223000	Weak transcription	HSMMtube	muscle
11	chr10:97219600-97223200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr10:97219600-97224200	Weak transcription	Stomach Mucosa	stomach
13	chr10:97219600-97225800	Weak transcription	Brain Germinal Matrix	brain
14	chr10:97219800-97222800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr10:97219800-97222800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr10:97219800-97222800	Weak transcription	Ovary	ovary
17	chr10:97219800-97223000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr10:97219800-97223400	Weak transcription	Fetal Intestine Large	intestine
19	chr10:97219800-97223400	Weak transcription	Fetal Muscle Trunk	muscle
20	chr10:97219800-97223600	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr10:97219800-97224400	Weak transcription	Fetal Intestine Small	intestine
22	chr10:97219800-97229600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr10:97220000-97222800	Enhancers	Fetal Brain Male	brain
24	chr10:97220000-97223000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr10:97220000-97224200	Weak transcription	Brain Cingulate Gyrus	brain
26	chr10:97220400-97222800	Weak transcription	Left Ventricle	heart
27	chr10:97220400-97222800	Weak transcription	Right Atrium	heart
28	chr10:97220400-97223400	Weak transcription	Psoas Muscle	Psoas
29	chr10:97220400-97223600	Enhancers	HUES48 Cell Line	embryonic stem cell
30	chr10:97220600-97222800	Enhancers	HUES64 Cell Line	embryonic stem cell
31	chr10:97220600-97232000	Enhancers	Fetal Heart	heart
32	chr10:97220800-97225000	Enhancers	HUES6 Cell Line	embryonic stem cell
33	chr10:97220800-97225000	Enhancers	iPS-18 Cell Line	embryonic stem cell
34	chr10:97221200-97222800	Weak transcription	Stomach Smooth Muscle	stomach
35	chr10:97221200-97223000	Enhancers	ES-I3 Cell Line	embryonic stem cell
36	chr10:97221200-97223800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
37	chr10:97221400-97222800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr10:97221600-97222800	Weak transcription	Aorta	Aorta
39	chr10:97221600-97222800	Weak transcription	Fetal Lung	lung
40	chr10:97221600-97224400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr10:97221600-97226200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr10:97221800-97222800	Weak transcription	Fetal Stomach	stomach
43	chr10:97221800-97226200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
44	chr10:97221800-97226200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr10:97222000-97224800	Enhancers	Liver	Liver
46	chr10:97222200-97223000	Enhancers	Duodenum Smooth Muscle	Duodenum
47	chr10:97222200-97225000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
48	chr10:97222400-97223200	Enhancers	H1 Cell Line	embryonic stem cell
49	chr10:97222400-97223200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
50	chr10:97222400-97223400	Enhancers	HepG2	liver

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