Variant report

Variant	rs2274491
Chromosome Location	chr10:97196978-97196979
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97189539..97192268-chr10:97195015..97197498,3	K562	blood:
2	chr10:97196672..97199755-chr10:97214969..97217951,3	K562	blood:
3	chr10:97190432..97193993-chr10:97195559..97198932,4	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1001875	0.87[YRI][hapmap]
rs2148892	0.81[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs3896409	1.00[YRI][hapmap]
rs4918930	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4918937	0.84[CEU][hapmap];0.94[CHB][hapmap];0.88[JPT][hapmap];0.85[YRI][hapmap];0.85[ASN][1000 genomes]
rs533232	0.85[ASN][1000 genomes]
rs540746	0.94[CHB][hapmap];0.89[JPT][hapmap];0.84[ASN][1000 genomes]
rs549062	0.80[CEU][hapmap];0.94[CHB][hapmap];0.89[JPT][hapmap];0.85[ASN][1000 genomes]
rs554765	0.81[CEU][hapmap];0.94[CHB][hapmap];0.89[JPT][hapmap];0.85[ASN][1000 genomes]
rs557941	0.84[ASN][1000 genomes]
rs564370	0.94[CHB][hapmap];0.89[JPT][hapmap];0.84[ASN][1000 genomes]
rs6583998	1.00[YRI][hapmap]
rs7074761	0.94[CHB][hapmap];0.89[JPT][hapmap];0.86[ASN][1000 genomes]
rs7094140	0.81[CEU][hapmap];0.94[CHB][hapmap];0.89[JPT][hapmap];0.85[ASN][1000 genomes]
rs7899065	0.94[CHB][hapmap];0.89[JPT][hapmap];0.85[ASN][1000 genomes]
rs7913557	0.94[CHB][hapmap];0.88[JPT][hapmap];0.85[ASN][1000 genomes]
rs7913770	0.80[CEU][hapmap];0.94[CHB][hapmap];0.89[JPT][hapmap];0.84[ASN][1000 genomes]
rs815313	0.83[ASN][1000 genomes]
rs943544	0.87[YRI][hapmap]

Variant related diseases (count:1)

Disease	PMID	Source
Migraine - clinic-based	23793025	GWAS catalog

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97158600-97199600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:97169600-97204800	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr10:97170600-97197800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr10:97171000-97208000	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr10:97175800-97204000	Weak transcription	Psoas Muscle	Psoas
6	chr10:97176000-97199200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr10:97178800-97198800	Genic enhancers	Colon Smooth Muscle	Colon
8	chr10:97185800-97205000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr10:97187200-97205400	Weak transcription	K562	blood
10	chr10:97189200-97205000	Weak transcription	Esophagus	oesophagus
11	chr10:97190200-97207200	Weak transcription	Colonic Mucosa	Colon
12	chr10:97190600-97200400	Strong transcription	Fetal Intestine Small	intestine
13	chr10:97190800-97201400	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr10:97190800-97208200	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr10:97191000-97199400	Weak transcription	Stomach Mucosa	stomach
16	chr10:97191000-97204800	Weak transcription	Duodenum Mucosa	Duodenum
17	chr10:97191800-97198000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr10:97192000-97200000	Strong transcription	HepG2	liver
19	chr10:97193400-97197600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr10:97193400-97210800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr10:97193800-97200600	Strong transcription	Fetal Intestine Large	intestine
22	chr10:97193800-97208000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr10:97194400-97197600	Strong transcription	HUES6 Cell Line	embryonic stem cell
24	chr10:97194400-97198800	Genic enhancers	Rectal Smooth Muscle	rectum
25	chr10:97194800-97197200	Strong transcription	Aorta	Aorta
26	chr10:97194800-97200400	Genic enhancers	Left Ventricle	heart
27	chr10:97195000-97197600	Genic enhancers	Right Ventricle	heart
28	chr10:97195000-97199600	Strong transcription	Cortex derived primary cultured neurospheres	brain
29	chr10:97195000-97200000	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr10:97195200-97197600	Strong transcription	Brain Angular Gyrus	brain
31	chr10:97195200-97197600	Strong transcription	Brain Germinal Matrix	brain
32	chr10:97195200-97204400	Weak transcription	Fetal Brain Male	brain
33	chr10:97195400-97197400	Strong transcription	Rectal Mucosa Donor 29	rectum
34	chr10:97195400-97197600	Strong transcription	Placenta	Placenta
35	chr10:97195400-97200800	Strong transcription	Fetal Stomach	stomach
36	chr10:97195400-97204800	Weak transcription	Fetal Lung	lung
37	chr10:97195600-97197200	Strong transcription	Fetal Muscle Trunk	muscle
38	chr10:97195600-97197400	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr10:97195600-97197600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
40	chr10:97195600-97197800	Strong transcription	Brain Inferior Temporal Lobe	brain
41	chr10:97195600-97200000	Genic enhancers	Stomach Smooth Muscle	stomach
42	chr10:97195600-97200800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr10:97195800-97197400	Strong transcription	Brain Cingulate Gyrus	brain
44	chr10:97195800-97197400	Strong transcription	Fetal Muscle Leg	muscle
45	chr10:97195800-97197600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr10:97195800-97200000	Weak transcription	Pancreas	Pancrea
47	chr10:97195800-97204800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
48	chr10:97195800-97204800	Weak transcription	Spleen	Spleen
49	chr10:97195800-97205000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
50	chr10:97196000-97197400	Strong transcription	Brain Substantia Nigra	brain

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