Variant report

Variant	rs3896409
Chromosome Location	chr10:97129084-97129085
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97126867..97129564-chr10:97130715..97133324,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1001875	0.96[CEU][hapmap];0.94[CHB][hapmap];0.86[JPT][hapmap];0.86[YRI][hapmap];0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10882583	0.88[CHB][hapmap];0.86[JPT][hapmap]
rs11188305	0.88[CHB][hapmap]
rs1887818	0.84[CEU][hapmap];0.89[CHB][hapmap];0.82[JPT][hapmap]
rs2025851	0.88[CEU][hapmap];0.88[CHB][hapmap];0.86[JPT][hapmap]
rs2274490	0.81[CEU][hapmap]
rs2274491	1.00[YRI][hapmap]
rs2861101	0.88[CHB][hapmap];0.83[JPT][hapmap]
rs3850692	0.90[EUR][1000 genomes]
rs4244314	0.82[CEU][hapmap];0.89[CHB][hapmap];0.82[JPT][hapmap]
rs4542335	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs4918911	0.83[CHB][hapmap]
rs4918921	0.81[CEU][hapmap]
rs4918937	0.84[YRI][hapmap]
rs6583995	0.88[CEU][hapmap];0.83[CHB][hapmap];0.80[JPT][hapmap];0.87[EUR][1000 genomes]
rs6583997	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6583998	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7074224	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs7080545	1.00[CEU][hapmap];0.94[CHB][hapmap];0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7090619	0.80[CEU][hapmap]
rs7094140	0.83[YRI][hapmap]
rs7094816	0.85[EUR][1000 genomes]
rs71483997	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7904517	0.83[CHB][hapmap];0.80[JPT][hapmap]
rs7914896	0.83[CHB][hapmap]
rs943544	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs955759	0.94[CHB][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes]

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97070400-97139600	Weak transcription	Fetal Brain Male	brain
2	chr10:97099200-97129200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:97102200-97136400	Weak transcription	Fetal Kidney	kidney
4	chr10:97107200-97151800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr10:97109000-97148000	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr10:97115800-97131600	Weak transcription	HSMMtube	muscle
7	chr10:97116000-97135000	Weak transcription	Brain Substantia Nigra	brain
8	chr10:97116000-97138200	Weak transcription	Ovary	ovary
9	chr10:97116400-97130600	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr10:97116400-97139600	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr10:97116400-97142400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr10:97116600-97130800	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr10:97116600-97139400	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr10:97116800-97130400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr10:97116800-97135200	Weak transcription	Brain Angular Gyrus	brain
16	chr10:97116800-97137600	Weak transcription	Fetal Muscle Leg	muscle
17	chr10:97116800-97141400	Weak transcription	Fetal Lung	lung
18	chr10:97117000-97130800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr10:97117400-97139200	Weak transcription	Brain Germinal Matrix	brain
20	chr10:97117600-97138000	Weak transcription	Fetal Muscle Trunk	muscle
21	chr10:97118000-97135800	Weak transcription	Fetal Brain Female	brain
22	chr10:97118000-97137800	Weak transcription	Pancreas	Pancrea
23	chr10:97120400-97141400	Weak transcription	Gastric	stomach
24	chr10:97120600-97130400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr10:97121000-97129400	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr10:97121000-97148000	Weak transcription	Esophagus	oesophagus
27	chr10:97121800-97130400	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr10:97122000-97135000	Weak transcription	Brain Hippocampus Middle	brain
29	chr10:97122000-97149400	Weak transcription	Spleen	Spleen
30	chr10:97122200-97135000	Weak transcription	Brain Cingulate Gyrus	brain
31	chr10:97122400-97131600	Weak transcription	Psoas Muscle	Psoas
32	chr10:97123200-97129200	Weak transcription	Fetal Intestine Large	intestine
33	chr10:97123200-97130600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
34	chr10:97123200-97130800	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr10:97123800-97129200	Strong transcription	Left Ventricle	heart
36	chr10:97124600-97135200	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr10:97124600-97135200	Strong transcription	Skeletal Muscle Male	skeletal muscle
38	chr10:97124800-97130200	Strong transcription	Fetal Intestine Small	intestine
39	chr10:97124800-97130800	Strong transcription	Fetal Stomach	stomach
40	chr10:97124800-97134600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr10:97124800-97137200	Strong transcription	Skeletal Muscle Female	skeletal muscle
42	chr10:97125000-97133000	Strong transcription	Placenta	Placenta
43	chr10:97125000-97133600	Strong transcription	Liver	Liver
44	chr10:97125200-97134200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr10:97125600-97129400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
46	chr10:97126200-97131200	Strong transcription	Right Ventricle	heart
47	chr10:97126200-97139400	Weak transcription	Lung	lung
48	chr10:97126800-97137800	Weak transcription	HepG2	liver
49	chr10:97127200-97129400	Strong transcription	Colon Smooth Muscle	Colon
50	chr10:97127400-97129600	Genic enhancers	Stomach Smooth Muscle	stomach

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