Variant report

Variant	rs7094816
Chromosome Location	chr10:97095275-97095276
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97095230..97097767-chr10:97100422..97102441,2	K562	blood:
2	chr10:97080532..97082399-chr10:97094368..97096857,2	K562	blood:
3	chr10:97049700..97052145-chr10:97094615..97096548,2	K562	blood:

Variant related genes	Relation type
ENSG00000107438	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10882583	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1887818	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2861101	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3850692	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3896409	0.85[EUR][1000 genomes]
rs4244314	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4542335	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4918911	0.81[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs6583995	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6583997	0.85[EUR][1000 genomes]
rs6583998	0.84[EUR][1000 genomes]
rs7904517	0.88[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs7914896	0.90[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs955759	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529726	chr10:96632494-97106315	Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97070400-97139600	Weak transcription	Fetal Brain Male	brain
2	chr10:97071000-97095800	Weak transcription	Pancreas	Pancrea
3	chr10:97071200-97098800	Weak transcription	Brain Substantia Nigra	brain
4	chr10:97074400-97095800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr10:97074600-97095800	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr10:97075200-97098800	Weak transcription	Ovary	ovary
7	chr10:97079400-97101400	Weak transcription	Fetal Kidney	kidney
8	chr10:97079400-97106400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr10:97080000-97099000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr10:97080000-97109600	Weak transcription	Fetal Lung	lung
11	chr10:97080400-97106200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr10:97083000-97098000	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr10:97084400-97095600	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr10:97087800-97095800	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr10:97087800-97097800	Weak transcription	Brain Hippocampus Middle	brain
16	chr10:97087800-97115400	Weak transcription	Colonic Mucosa	Colon
17	chr10:97088000-97110600	Weak transcription	Duodenum Mucosa	Duodenum
18	chr10:97089000-97096400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr10:97089200-97097200	Weak transcription	Brain Angular Gyrus	brain
20	chr10:97091000-97098000	Genic enhancers	Left Ventricle	heart
21	chr10:97091000-97102000	Strong transcription	Fetal Brain Female	brain
22	chr10:97091400-97095400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr10:97091600-97099800	Strong transcription	Cortex derived primary cultured neurospheres	brain
24	chr10:97091800-97101400	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr10:97092600-97098200	Strong transcription	Fetal Intestine Large	intestine
26	chr10:97092600-97100200	Strong transcription	Liver	Liver
27	chr10:97093200-97095800	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr10:97093200-97097800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr10:97093200-97099200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr10:97093200-97103600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
31	chr10:97093200-97106400	Weak transcription	HUES64 Cell Line	embryonic stem cell
32	chr10:97093400-97095800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr10:97093400-97103600	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr10:97093400-97103600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chr10:97093600-97096600	Genic enhancers	Adipose Nuclei	Adipose
36	chr10:97093600-97096800	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
37	chr10:97093800-97095400	Enhancers	HMEC	breast
38	chr10:97093800-97095400	Enhancers	NHEK	skin
39	chr10:97093800-97098400	Genic enhancers	Stomach Smooth Muscle	stomach
40	chr10:97094000-97095400	Genic enhancers	Aorta	Aorta
41	chr10:97094000-97095400	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
42	chr10:97094000-97096200	Genic enhancers	Fetal Muscle Trunk	muscle
43	chr10:97094000-97096400	Genic enhancers	Colon Smooth Muscle	Colon
44	chr10:97094000-97097800	Enhancers	Right Atrium	heart
45	chr10:97094200-97095600	Strong transcription	Brain Cingulate Gyrus	brain
46	chr10:97094200-97096600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr10:97094200-97097400	Genic enhancers	Rectal Smooth Muscle	rectum
48	chr10:97094400-97096000	Genic enhancers	Skeletal Muscle Male	skeletal muscle
49	chr10:97094400-97106600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
50	chr10:97094600-97096400	Genic enhancers	Duodenum Smooth Muscle	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links