Variant report

Variant	rs10882583
Chromosome Location	chr10:97109019-97109020
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1001875	0.83[CHB][hapmap];0.84[TSI][hapmap]
rs1410601	0.94[MEX][hapmap]
rs1887818	0.88[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.94[YRI][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2025851	0.89[CHB][hapmap];0.87[JPT][hapmap]
rs2274629	0.84[CHD][hapmap]
rs2861101	0.84[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.88[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3850692	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs3896409	0.88[CHB][hapmap];0.86[JPT][hapmap]
rs4244314	0.92[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.90[YRI][hapmap];0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4542335	0.85[CEU][hapmap];0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4918911	0.81[CEU][hapmap];0.94[CHB][hapmap];0.84[YRI][hapmap];0.88[ASN][1000 genomes]
rs6583995	0.85[CEU][hapmap];0.94[CHB][hapmap];0.94[CHD][hapmap];0.94[JPT][hapmap];0.82[MEX][hapmap];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6583997	0.89[CHB][hapmap];0.87[JPT][hapmap]
rs6583998	0.89[CHB][hapmap];0.87[JPT][hapmap]
rs7074224	0.89[CHB][hapmap];0.87[JPT][hapmap]
rs7080545	0.83[CHB][hapmap]
rs7094816	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7904517	0.91[ASW][hapmap];0.82[CEU][hapmap];0.94[CHB][hapmap];0.86[CHD][hapmap];0.81[GIH][hapmap];0.94[JPT][hapmap];0.83[LWK][hapmap];0.83[MEX][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs7914896	0.91[ASW][hapmap];0.82[CEU][hapmap];0.94[CHB][hapmap];0.87[CHD][hapmap];0.93[JPT][hapmap];0.88[LWK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs943544	0.89[CHB][hapmap];0.87[JPT][hapmap]
rs955759	0.82[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.89[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10882583	PPP1R3C	cis	parietal	SCAN
rs10882583	ANKRD2	cis	cerebellum	SCAN

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97070400-97139600	Weak transcription	Fetal Brain Male	brain
2	chr10:97080000-97109600	Weak transcription	Fetal Lung	lung
3	chr10:97087800-97115400	Weak transcription	Colonic Mucosa	Colon
4	chr10:97088000-97110600	Weak transcription	Duodenum Mucosa	Duodenum
5	chr10:97094600-97118000	Weak transcription	HSMM	muscle
6	chr10:97095000-97110600	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr10:97095000-97115200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr10:97096400-97110600	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr10:97096600-97110600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr10:97096800-97110600	Weak transcription	Psoas Muscle	Psoas
11	chr10:97097800-97110600	Weak transcription	Right Atrium	heart
12	chr10:97097800-97116000	Weak transcription	Spleen	Spleen
13	chr10:97099200-97110600	Weak transcription	Lung	lung
14	chr10:97099200-97110800	Weak transcription	Fetal Intestine Small	intestine
15	chr10:97099200-97113400	Weak transcription	Ovary	ovary
16	chr10:97099200-97115200	Weak transcription	Esophagus	oesophagus
17	chr10:97099200-97129200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr10:97099400-97110000	Weak transcription	HMEC	breast
19	chr10:97099400-97110200	Weak transcription	Brain Hippocampus Middle	brain
20	chr10:97099400-97111000	Weak transcription	Brain Substantia Nigra	brain
21	chr10:97102200-97136400	Weak transcription	Fetal Kidney	kidney
22	chr10:97103400-97110400	Strong transcription	Colon Smooth Muscle	Colon
23	chr10:97103400-97110600	Strong transcription	Brain Anterior Caudate	brain
24	chr10:97103400-97118000	Strong transcription	Fetal Brain Female	brain
25	chr10:97105000-97118200	Strong transcription	Aorta	Aorta
26	chr10:97105400-97110400	Weak transcription	Fetal Intestine Large	intestine
27	chr10:97105600-97110200	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr10:97105800-97110800	Enhancers	HepG2	liver
29	chr10:97106200-97110000	Weak transcription	Brain Germinal Matrix	brain
30	chr10:97106400-97110600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr10:97106800-97112400	Weak transcription	GM12878-XiMat	blood
32	chr10:97106800-97114200	Weak transcription	HUES64 Cell Line	embryonic stem cell
33	chr10:97107000-97110000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr10:97107000-97110200	Weak transcription	A549	lung
35	chr10:97107000-97110400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
36	chr10:97107000-97110600	Weak transcription	Right Ventricle	heart
37	chr10:97107000-97115600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr10:97107200-97110200	Weak transcription	NHEK	skin
39	chr10:97107200-97110400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr10:97107200-97113600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr10:97107200-97113600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
42	chr10:97107200-97120200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr10:97107200-97151800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
44	chr10:97107600-97109200	Genic enhancers	Placenta	Placenta
45	chr10:97107600-97110600	Weak transcription	HUES6 Cell Line	embryonic stem cell
46	chr10:97107600-97114000	Weak transcription	HUES48 Cell Line	embryonic stem cell
47	chr10:97107600-97116000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr10:97107600-97116600	Genic enhancers	Adipose Nuclei	Adipose
49	chr10:97107600-97119800	Strong transcription	Fetal Stomach	stomach
50	chr10:97107800-97110600	Weak transcription	Pancreas	Pancrea

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