Variant report

Variant	rs7074224
Chromosome Location	chr10:97127577-97127578
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97126867..97129564-chr10:97130715..97133324,2	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1001875	0.92[CEU][hapmap];0.94[CHB][hapmap];0.91[CHD][hapmap];0.87[JPT][hapmap];0.81[MKK][hapmap];0.85[ASN][1000 genomes]
rs10882583	0.89[CHB][hapmap];0.87[JPT][hapmap]
rs11188305	0.88[CHB][hapmap]
rs1887818	0.89[CHB][hapmap];0.81[JPT][hapmap]
rs2025851	1.00[CEU][hapmap];0.89[CHB][hapmap];0.86[GIH][hapmap];0.87[JPT][hapmap];0.94[MEX][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2274490	0.92[CEU][hapmap]
rs2861101	0.89[CHB][hapmap]
rs3896409	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs4244314	0.89[CHB][hapmap];0.81[JPT][hapmap]
rs4918911	0.83[CHB][hapmap]
rs4918921	0.92[CEU][hapmap]
rs6583995	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs6583997	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6583998	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[MKK][hapmap];1.00[ASN][1000 genomes]
rs7080545	0.88[CEU][hapmap];0.94[CHB][hapmap];0.82[LWK][hapmap];0.83[MKK][hapmap]
rs7090619	0.81[ASW][hapmap]
rs71483997	0.90[ASN][1000 genomes]
rs7904517	0.84[CHB][hapmap];0.81[JPT][hapmap]
rs7914896	0.84[CHB][hapmap];0.80[JPT][hapmap]
rs943544	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.81[MKK][hapmap];0.90[ASN][1000 genomes]
rs955759	0.94[CHB][hapmap];0.87[JPT][hapmap];0.82[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7074224	PPP1R3C	cis	parietal	SCAN
rs7074224	PI4K2A	cis	cerebellum	SCAN

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97070400-97139600	Weak transcription	Fetal Brain Male	brain
2	chr10:97099200-97129200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:97102200-97136400	Weak transcription	Fetal Kidney	kidney
4	chr10:97107200-97151800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr10:97109000-97128200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr10:97109000-97148000	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr10:97115800-97131600	Weak transcription	HSMMtube	muscle
8	chr10:97116000-97135000	Weak transcription	Brain Substantia Nigra	brain
9	chr10:97116000-97138200	Weak transcription	Ovary	ovary
10	chr10:97116400-97130600	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr10:97116400-97139600	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr10:97116400-97142400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr10:97116600-97127600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr10:97116600-97130800	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr10:97116600-97139400	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr10:97116800-97130400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr10:97116800-97135200	Weak transcription	Brain Angular Gyrus	brain
18	chr10:97116800-97137600	Weak transcription	Fetal Muscle Leg	muscle
19	chr10:97116800-97141400	Weak transcription	Fetal Lung	lung
20	chr10:97117000-97130800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr10:97117200-97128000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr10:97117400-97139200	Weak transcription	Brain Germinal Matrix	brain
23	chr10:97117600-97138000	Weak transcription	Fetal Muscle Trunk	muscle
24	chr10:97118000-97135800	Weak transcription	Fetal Brain Female	brain
25	chr10:97118000-97137800	Weak transcription	Pancreas	Pancrea
26	chr10:97120400-97127800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr10:97120400-97141400	Weak transcription	Gastric	stomach
28	chr10:97120600-97130400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr10:97121000-97129400	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr10:97121000-97148000	Weak transcription	Esophagus	oesophagus
31	chr10:97121800-97130400	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr10:97122000-97135000	Weak transcription	Brain Hippocampus Middle	brain
33	chr10:97122000-97149400	Weak transcription	Spleen	Spleen
34	chr10:97122200-97128400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr10:97122200-97135000	Weak transcription	Brain Cingulate Gyrus	brain
36	chr10:97122400-97131600	Weak transcription	Psoas Muscle	Psoas
37	chr10:97122600-97128600	Weak transcription	Right Atrium	heart
38	chr10:97123200-97128400	Weak transcription	Fetal Heart	heart
39	chr10:97123200-97129200	Weak transcription	Fetal Intestine Large	intestine
40	chr10:97123200-97130600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
41	chr10:97123200-97130800	Weak transcription	HUES6 Cell Line	embryonic stem cell
42	chr10:97123800-97128400	Weak transcription	Rectal Smooth Muscle	rectum
43	chr10:97123800-97128600	Strong transcription	Adipose Nuclei	Adipose
44	chr10:97123800-97129200	Strong transcription	Left Ventricle	heart
45	chr10:97124600-97135200	Weak transcription	Brain Inferior Temporal Lobe	brain
46	chr10:97124600-97135200	Strong transcription	Skeletal Muscle Male	skeletal muscle
47	chr10:97124800-97130200	Strong transcription	Fetal Intestine Small	intestine
48	chr10:97124800-97130800	Strong transcription	Fetal Stomach	stomach
49	chr10:97124800-97134600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr10:97124800-97137200	Strong transcription	Skeletal Muscle Female	skeletal muscle

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