Variant report

Variant	rs4244314
Chromosome Location	chr10:97088240-97088241
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97074843..97077067-chr10:97087421..97090006,2	K562	blood:
2	chr10:97083801..97085402-chr10:97087063..97088908,2	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1001875	0.83[CHB][hapmap]
rs10882583	0.92[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.90[YRI][hapmap];0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1410601	0.81[JPT][hapmap]
rs1887818	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2025851	0.89[CHB][hapmap];0.81[JPT][hapmap]
rs2861101	0.85[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3193970	0.83[JPT][hapmap]
rs3850692	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3896409	0.82[CEU][hapmap];0.89[CHB][hapmap];0.82[JPT][hapmap]
rs4542335	0.93[CEU][hapmap];0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4918911	0.94[CHB][hapmap];0.84[JPT][hapmap];0.95[YRI][hapmap];0.88[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs6583995	0.92[CEU][hapmap];0.94[CHB][hapmap];0.87[JPT][hapmap];0.83[YRI][hapmap];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6583997	0.82[CEU][hapmap];0.89[CHB][hapmap];0.83[JPT][hapmap]
rs6583998	0.82[CEU][hapmap];0.89[CHB][hapmap];0.81[JPT][hapmap];0.81[EUR][1000 genomes]
rs7074224	0.89[CHB][hapmap];0.81[JPT][hapmap]
rs7080545	0.82[CEU][hapmap];0.83[CHB][hapmap]
rs7094816	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7904517	0.94[CHB][hapmap];0.87[JPT][hapmap];0.90[YRI][hapmap];0.84[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs7914896	0.94[CHB][hapmap];0.87[JPT][hapmap];0.90[YRI][hapmap];0.83[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs943544	0.82[CEU][hapmap];0.89[CHB][hapmap];0.81[JPT][hapmap]
rs955759	0.94[CHB][hapmap];0.94[JPT][hapmap];0.90[YRI][hapmap];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529726	chr10:96632494-97106315	Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97070400-97139600	Weak transcription	Fetal Brain Male	brain
2	chr10:97070800-97094200	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr10:97071000-97095800	Weak transcription	Pancreas	Pancrea
4	chr10:97071200-97098800	Weak transcription	Brain Substantia Nigra	brain
5	chr10:97073400-97092600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr10:97073400-97092800	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr10:97073600-97095200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr10:97074400-97095800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr10:97074600-97095800	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr10:97075200-97098800	Weak transcription	Ovary	ovary
11	chr10:97075800-97089000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr10:97079400-97101400	Weak transcription	Fetal Kidney	kidney
13	chr10:97079400-97106400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr10:97080000-97099000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr10:97080000-97109600	Weak transcription	Fetal Lung	lung
16	chr10:97080400-97093200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr10:97080400-97106200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr10:97081800-97088800	Weak transcription	Brain Angular Gyrus	brain
19	chr10:97081800-97089200	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr10:97081800-97091000	Weak transcription	Fetal Intestine Large	intestine
21	chr10:97081800-97092600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr10:97083000-97098000	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr10:97083400-97089200	Weak transcription	GM12878-XiMat	blood
24	chr10:97083400-97093000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr10:97083800-97091000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr10:97084400-97095600	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr10:97084600-97092600	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr10:97084800-97094200	Weak transcription	Brain Cingulate Gyrus	brain
29	chr10:97085000-97089600	Weak transcription	HUVEC	blood vessel
30	chr10:97085000-97091200	Weak transcription	Brain Germinal Matrix	brain
31	chr10:97085000-97091200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr10:97085000-97091600	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr10:97085800-97088800	Enhancers	Skeletal Muscle Female	skeletal muscle
34	chr10:97086400-97091400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr10:97087000-97088400	Enhancers	Fetal Heart	heart
36	chr10:97087000-97089200	Genic enhancers	Stomach Smooth Muscle	stomach
37	chr10:97087400-97089800	Enhancers	Skeletal Muscle Male	skeletal muscle
38	chr10:97087400-97090000	Genic enhancers	Colon Smooth Muscle	Colon
39	chr10:97087400-97091800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr10:97087600-97089000	Weak transcription	Brain Anterior Caudate	brain
41	chr10:97087600-97089400	Strong transcription	Aorta	Aorta
42	chr10:97087600-97089400	Weak transcription	Sigmoid Colon	Sigmoid Colon
43	chr10:97087600-97089800	Weak transcription	HepG2	liver
44	chr10:97087600-97092400	Weak transcription	HSMMtube	muscle
45	chr10:97087600-97093800	Strong transcription	Placenta	Placenta
46	chr10:97087600-97094000	Weak transcription	Fetal Muscle Trunk	muscle
47	chr10:97087600-97094000	Weak transcription	Stomach Mucosa	stomach
48	chr10:97087800-97088600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
49	chr10:97087800-97089800	Weak transcription	Pancreatic Islets	Pancreatic Islet
50	chr10:97087800-97090800	Weak transcription	Rectal Smooth Muscle	rectum

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