Variant report

Variant	rs4918911
Chromosome Location	chr10:97083979-97083980
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97079430..97082419-chr10:97082702..97084637,2	MCF-7	breast:
2	chr10:97083241..97086137-chr10:97105978..97107656,2	K562	blood:
3	chr10:97083801..97085402-chr10:97087063..97088908,2	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1001875	0.89[CHB][hapmap]
rs10882583	0.81[CEU][hapmap];0.94[CHB][hapmap];0.84[YRI][hapmap];0.88[ASN][1000 genomes]
rs1887818	0.94[CHB][hapmap];0.84[JPT][hapmap];0.83[YRI][hapmap];0.82[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs2025851	0.94[CHB][hapmap]
rs2861101	0.94[CHB][hapmap];0.90[ASN][1000 genomes]
rs3850692	0.87[ASN][1000 genomes]
rs3896409	0.83[CHB][hapmap]
rs4244314	0.94[CHB][hapmap];0.84[JPT][hapmap];0.95[YRI][hapmap];0.88[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs4542335	0.86[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs6583995	1.00[CHB][hapmap];0.83[JPT][hapmap];0.83[YRI][hapmap];0.93[ASN][1000 genomes]
rs6583997	0.83[CHB][hapmap]
rs6583998	0.83[CHB][hapmap]
rs7074224	0.83[CHB][hapmap]
rs7094816	0.81[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs7904517	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.84[YRI][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7914896	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.84[YRI][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs943544	0.83[CHB][hapmap]
rs955759	1.00[CEU][hapmap];0.88[CHB][hapmap];0.85[YRI][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529726	chr10:96632494-97106315	Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97069200-97087000	Weak transcription	HSMM	muscle
2	chr10:97070400-97139600	Weak transcription	Fetal Brain Male	brain
3	chr10:97070800-97085800	Weak transcription	Small Intestine	intestine
4	chr10:97070800-97094200	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr10:97071000-97086000	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr10:97071000-97087000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
7	chr10:97071000-97087000	Weak transcription	Esophagus	oesophagus
8	chr10:97071000-97095800	Weak transcription	Pancreas	Pancrea
9	chr10:97071200-97098800	Weak transcription	Brain Substantia Nigra	brain
10	chr10:97072000-97087000	Strong transcription	Adipose Nuclei	Adipose
11	chr10:97073000-97085000	Weak transcription	Duodenum Mucosa	Duodenum
12	chr10:97073000-97085600	Weak transcription	Stomach Mucosa	stomach
13	chr10:97073400-97084200	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr10:97073400-97092600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr10:97073400-97092800	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr10:97073600-97095200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr10:97074400-97087400	Weak transcription	Spleen	Spleen
18	chr10:97074400-97095800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr10:97074600-97084800	Weak transcription	Right Atrium	heart
20	chr10:97074600-97087000	Strong transcription	Aorta	Aorta
21	chr10:97074600-97095800	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr10:97074800-97087000	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr10:97075200-97087000	Weak transcription	Psoas Muscle	Psoas
24	chr10:97075200-97098800	Weak transcription	Ovary	ovary
25	chr10:97075600-97087000	Strong transcription	Stomach Smooth Muscle	stomach
26	chr10:97075800-97089000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr10:97077200-97084400	Strong transcription	Fetal Brain Female	brain
28	chr10:97079000-97085000	Strong transcription	Brain Germinal Matrix	brain
29	chr10:97079200-97085200	Strong transcription	Placenta	Placenta
30	chr10:97079400-97085000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr10:97079400-97085000	Strong transcription	Fetal Stomach	stomach
32	chr10:97079400-97101400	Weak transcription	Fetal Kidney	kidney
33	chr10:97079400-97106400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr10:97079600-97084400	Strong transcription	Liver	Liver
35	chr10:97079600-97084600	Strong transcription	Fetal Intestine Small	intestine
36	chr10:97080000-97084000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr10:97080000-97099000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr10:97080000-97109600	Weak transcription	Fetal Lung	lung
39	chr10:97080400-97085000	Strong transcription	Cortex derived primary cultured neurospheres	brain
40	chr10:97080400-97093200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr10:97080400-97106200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr10:97081200-97087000	Weak transcription	Pancreatic Islets	Pancreatic Islet
43	chr10:97081800-97084400	Weak transcription	HUES64 Cell Line	embryonic stem cell
44	chr10:97081800-97086000	Weak transcription	Gastric	stomach
45	chr10:97081800-97087200	Weak transcription	Fetal Muscle Trunk	muscle
46	chr10:97081800-97087200	Weak transcription	HSMMtube	muscle
47	chr10:97081800-97087400	Weak transcription	Brain Hippocampus Middle	brain
48	chr10:97081800-97088800	Weak transcription	Brain Angular Gyrus	brain
49	chr10:97081800-97089200	Weak transcription	HUES6 Cell Line	embryonic stem cell
50	chr10:97081800-97091000	Weak transcription	Fetal Intestine Large	intestine

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