Variant report

Variant	rs2025851
Chromosome Location	chr10:97139954-97139955
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97071593..97074402-chr10:97139756..97142626,2	K562	blood:
2	chr10:97132552..97135428-chr10:97138825..97140686,2	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1001875	0.87[ASW][hapmap];0.92[CEU][hapmap];0.94[CHB][hapmap];0.87[JPT][hapmap];0.83[YRI][hapmap];0.86[ASN][1000 genomes]
rs10882583	0.89[CHB][hapmap];0.87[JPT][hapmap]
rs1887818	0.89[CHB][hapmap];0.80[JPT][hapmap]
rs2274490	0.92[CEU][hapmap]
rs2861101	0.88[CHB][hapmap]
rs3896409	0.88[CEU][hapmap];0.88[CHB][hapmap];0.86[JPT][hapmap]
rs4244314	0.89[CHB][hapmap];0.81[JPT][hapmap]
rs4918911	0.94[CHB][hapmap]
rs4918921	0.92[CEU][hapmap]
rs6583995	0.94[CHB][hapmap];0.83[CHD][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs6583997	0.88[CEU][hapmap];0.89[CHB][hapmap];0.87[JPT][hapmap]
rs6583998	0.87[ASW][hapmap];0.88[CEU][hapmap];0.89[CHB][hapmap];0.87[JPT][hapmap]
rs7074224	1.00[CEU][hapmap];0.89[CHB][hapmap];0.86[GIH][hapmap];0.87[JPT][hapmap];0.94[MEX][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7080545	0.87[ASW][hapmap];0.88[CEU][hapmap];0.83[CHB][hapmap];0.83[LWK][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs71483997	0.82[ASN][1000 genomes]
rs7904517	0.94[CHB][hapmap];0.81[CHD][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs7914896	0.94[CHB][hapmap];0.81[CHD][hapmap];0.93[JPT][hapmap]
rs943544	0.87[ASW][hapmap];0.88[CEU][hapmap];0.89[CHB][hapmap];0.87[JPT][hapmap];0.83[YRI][hapmap];0.82[ASN][1000 genomes]
rs955759	0.94[CHB][hapmap];0.87[JPT][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2025851	PPP1R3C	cis	parietal	SCAN
rs2025851	PDE6C	cis	cerebellum	SCAN

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97107200-97151800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:97109000-97148000	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr10:97116400-97142400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr10:97116800-97141400	Weak transcription	Fetal Lung	lung
5	chr10:97120400-97141400	Weak transcription	Gastric	stomach
6	chr10:97121000-97148000	Weak transcription	Esophagus	oesophagus
7	chr10:97122000-97149400	Weak transcription	Spleen	Spleen
8	chr10:97130200-97141600	Weak transcription	Fetal Intestine Small	intestine
9	chr10:97130200-97156600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr10:97131200-97140200	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr10:97131200-97140200	Weak transcription	HSMM	muscle
12	chr10:97131800-97140200	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr10:97133000-97142400	Genic enhancers	Adipose Nuclei	Adipose
14	chr10:97135600-97155600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr10:97135800-97141600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr10:97135800-97145000	Strong transcription	Fetal Brain Female	brain
17	chr10:97136000-97141200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr10:97136200-97145400	Strong transcription	Placenta	Placenta
19	chr10:97137000-97140400	Genic enhancers	Colon Smooth Muscle	Colon
20	chr10:97137200-97140800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr10:97137200-97147400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr10:97137200-97148000	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr10:97137600-97145000	Strong transcription	Fetal Muscle Leg	muscle
24	chr10:97137800-97140400	Strong transcription	Pancreas	Pancrea
25	chr10:97137800-97140400	Genic enhancers	Rectal Smooth Muscle	rectum
26	chr10:97137800-97142200	Strong transcription	HSMMtube	muscle
27	chr10:97137800-97144000	Strong transcription	Psoas Muscle	Psoas
28	chr10:97137800-97144200	Strong transcription	HUES48 Cell Line	embryonic stem cell
29	chr10:97137800-97146200	Weak transcription	Small Intestine	intestine
30	chr10:97137800-97147400	Strong transcription	HepG2	liver
31	chr10:97137800-97156000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr10:97138000-97140000	Genic enhancers	Stomach Smooth Muscle	stomach
33	chr10:97138000-97145000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr10:97138200-97143600	Weak transcription	GM12878-XiMat	blood
35	chr10:97138200-97147200	Strong transcription	Skeletal Muscle Male	skeletal muscle
36	chr10:97138400-97141400	Weak transcription	Brain Substantia Nigra	brain
37	chr10:97138400-97141400	Weak transcription	Ovary	ovary
38	chr10:97138400-97143600	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr10:97138400-97145000	Weak transcription	Stomach Mucosa	stomach
40	chr10:97138400-97145800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr10:97138400-97147000	Strong transcription	Skeletal Muscle Female	skeletal muscle
42	chr10:97138400-97147400	Weak transcription	Right Atrium	heart
43	chr10:97138600-97144600	Strong transcription	Fetal Stomach	stomach
44	chr10:97138600-97145400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr10:97138800-97141800	Weak transcription	Right Ventricle	heart
46	chr10:97139000-97140000	Genic enhancers	Fetal Heart	heart
47	chr10:97139000-97143200	Strong transcription	Brain Inferior Temporal Lobe	brain
48	chr10:97139200-97143000	Strong transcription	Brain Germinal Matrix	brain
49	chr10:97139200-97144000	Strong transcription	HUES6 Cell Line	embryonic stem cell
50	chr10:97139200-97144400	Strong transcription	Fetal Intestine Large	intestine

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