Variant report

Variant	rs1001875
Chromosome Location	chr10:97144833-97144834
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10882583	0.83[CHB][hapmap];0.84[TSI][hapmap]
rs11188305	0.83[CHB][hapmap]
rs1887818	0.84[CEU][hapmap];0.83[CHB][hapmap]
rs2025851	0.87[ASW][hapmap];0.92[CEU][hapmap];0.94[CHB][hapmap];0.87[JPT][hapmap];0.83[YRI][hapmap];0.86[ASN][1000 genomes]
rs2274490	0.85[CEU][hapmap]
rs2274491	0.87[YRI][hapmap]
rs2861101	0.83[CHB][hapmap]
rs3850692	0.84[EUR][1000 genomes]
rs3896409	0.96[CEU][hapmap];0.94[CHB][hapmap];0.86[JPT][hapmap];0.86[YRI][hapmap];0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4244314	0.83[CHB][hapmap]
rs4542335	0.84[CEU][hapmap]
rs4918911	0.89[CHB][hapmap]
rs4918921	0.85[CEU][hapmap]
rs6583995	0.84[CEU][hapmap];0.89[CHB][hapmap];0.95[GIH][hapmap];0.81[JPT][hapmap];0.93[TSI][hapmap];0.80[EUR][1000 genomes]
rs6583997	0.96[CEU][hapmap];0.94[CHB][hapmap];0.87[JPT][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6583998	1.00[ASW][hapmap];0.96[CEU][hapmap];0.94[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];0.87[JPT][hapmap];0.96[LWK][hapmap];0.98[MKK][hapmap];0.93[TSI][hapmap];0.87[YRI][hapmap];0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7074224	0.92[CEU][hapmap];0.94[CHB][hapmap];0.91[CHD][hapmap];0.87[JPT][hapmap];0.81[MKK][hapmap];0.85[ASN][1000 genomes]
rs7080545	1.00[ASW][hapmap];0.96[CEU][hapmap];0.89[CHB][hapmap];0.91[GIH][hapmap];0.98[MKK][hapmap];0.84[TSI][hapmap];0.83[YRI][hapmap];0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7090619	0.84[CEU][hapmap];0.82[GIH][hapmap]
rs71483997	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7904517	0.89[CHB][hapmap];0.81[JPT][hapmap]
rs7914896	0.89[CHB][hapmap]
rs943544	1.00[ASW][hapmap];0.96[CEU][hapmap];0.94[CHB][hapmap];0.91[CHD][hapmap];0.91[GIH][hapmap];0.87[JPT][hapmap];0.96[LWK][hapmap];1.00[MKK][hapmap];0.84[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs955759	0.88[CHB][hapmap]

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97107200-97151800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:97109000-97148000	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr10:97121000-97148000	Weak transcription	Esophagus	oesophagus
4	chr10:97122000-97149400	Weak transcription	Spleen	Spleen
5	chr10:97130200-97156600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr10:97135600-97155600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr10:97135800-97145000	Strong transcription	Fetal Brain Female	brain
8	chr10:97136200-97145400	Strong transcription	Placenta	Placenta
9	chr10:97137200-97147400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr10:97137200-97148000	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr10:97137600-97145000	Strong transcription	Fetal Muscle Leg	muscle
12	chr10:97137800-97146200	Weak transcription	Small Intestine	intestine
13	chr10:97137800-97147400	Strong transcription	HepG2	liver
14	chr10:97137800-97156000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr10:97138000-97145000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr10:97138200-97147200	Strong transcription	Skeletal Muscle Male	skeletal muscle
17	chr10:97138400-97145000	Weak transcription	Stomach Mucosa	stomach
18	chr10:97138400-97145800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr10:97138400-97147000	Strong transcription	Skeletal Muscle Female	skeletal muscle
20	chr10:97138400-97147400	Weak transcription	Right Atrium	heart
21	chr10:97138600-97145400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr10:97139200-97145600	Strong transcription	Liver	Liver
23	chr10:97139400-97145000	Strong transcription	Brain Cingulate Gyrus	brain
24	chr10:97139400-97145400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr10:97139600-97145000	Strong transcription	Cortex derived primary cultured neurospheres	brain
26	chr10:97140000-97148200	Weak transcription	Fetal Heart	heart
27	chr10:97140600-97158600	Weak transcription	HSMM	muscle
28	chr10:97140800-97147000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr10:97140800-97147200	Weak transcription	Brain Angular Gyrus	brain
30	chr10:97140800-97148000	Weak transcription	Duodenum Mucosa	Duodenum
31	chr10:97140800-97152400	Weak transcription	Colonic Mucosa	Colon
32	chr10:97141000-97147800	Weak transcription	Fetal Brain Male	brain
33	chr10:97142200-97146200	Weak transcription	Pancreas	Pancrea
34	chr10:97142200-97147400	Weak transcription	Gastric	stomach
35	chr10:97142200-97147400	Weak transcription	Rectal Mucosa Donor 31	rectum
36	chr10:97142200-97151800	Weak transcription	H1 Cell Line	embryonic stem cell
37	chr10:97142200-97152400	Weak transcription	Fetal Muscle Trunk	muscle
38	chr10:97142400-97146400	Weak transcription	Brain Hippocampus Middle	brain
39	chr10:97142400-97147600	Weak transcription	Brain Substantia Nigra	brain
40	chr10:97142400-97152400	Weak transcription	H9 Cell Line	embryonic stem cell
41	chr10:97142600-97155600	Weak transcription	Rectal Mucosa Donor 29	rectum
42	chr10:97143000-97148800	Weak transcription	Brain Germinal Matrix	brain
43	chr10:97143000-97151400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr10:97143200-97147200	Weak transcription	Brain Inferior Temporal Lobe	brain
45	chr10:97143400-97145600	Strong transcription	Right Ventricle	heart
46	chr10:97143400-97147400	Weak transcription	Brain Anterior Caudate	brain
47	chr10:97143600-97145200	Enhancers	GM12878-XiMat	blood
48	chr10:97143600-97147000	Genic enhancers	Adipose Nuclei	Adipose
49	chr10:97143600-97151000	Weak transcription	Fetal Lung	lung
50	chr10:97143600-97151400	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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