Variant report

Variant	rs7090619
Chromosome Location	chr10:97173273-97173274
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1001875	0.84[CEU][hapmap];0.82[GIH][hapmap]
rs3896409	0.80[CEU][hapmap]
rs6583997	0.80[CEU][hapmap]
rs6583998	0.81[CEU][hapmap];0.82[GIH][hapmap]
rs7074224	0.81[ASW][hapmap]
rs7080545	0.81[CEU][hapmap];0.91[GIH][hapmap]
rs943544	0.81[CEU][hapmap];0.91[GIH][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7090619	C10orf131	cis	parietal	SCAN
rs7090619	PPP1R3C	cis	parietal	SCAN

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97154400-97190800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr10:97156800-97173400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:97156800-97182600	Weak transcription	Esophagus	oesophagus
4	chr10:97157000-97174000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr10:97157000-97183200	Weak transcription	Colonic Mucosa	Colon
6	chr10:97157000-97190400	Weak transcription	Spleen	Spleen
7	chr10:97158600-97199600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr10:97159200-97187000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr10:97165400-97177200	Strong transcription	HepG2	liver
10	chr10:97166400-97185800	Weak transcription	Fetal Lung	lung
11	chr10:97167000-97173600	Weak transcription	Gastric	stomach
12	chr10:97167000-97173800	Weak transcription	Brain Germinal Matrix	brain
13	chr10:97167200-97173800	Weak transcription	Pancreas	Pancrea
14	chr10:97167200-97183200	Weak transcription	Duodenum Mucosa	Duodenum
15	chr10:97167800-97173400	Weak transcription	Fetal Muscle Trunk	muscle
16	chr10:97168000-97173400	Weak transcription	Fetal Intestine Small	intestine
17	chr10:97168200-97173800	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr10:97168200-97174000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr10:97168200-97174000	Weak transcription	Lung	lung
20	chr10:97168600-97175200	Weak transcription	HSMMtube	muscle
21	chr10:97169000-97177000	Strong transcription	Liver	Liver
22	chr10:97169200-97180400	Weak transcription	Ovary	ovary
23	chr10:97169400-97174400	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
24	chr10:97169600-97174400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
25	chr10:97169600-97204800	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr10:97169800-97173800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr10:97169800-97174200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr10:97169800-97182800	Weak transcription	Stomach Mucosa	stomach
29	chr10:97170200-97184600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr10:97170400-97173400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr10:97170400-97173800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr10:97170400-97173800	Weak transcription	Brain Substantia Nigra	brain
33	chr10:97170400-97175200	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr10:97170600-97173800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chr10:97170600-97175000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr10:97170600-97175200	Weak transcription	HUES6 Cell Line	embryonic stem cell
37	chr10:97170600-97197800	Weak transcription	H9 Cell Line	embryonic stem cell
38	chr10:97171000-97174000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr10:97171000-97174200	Weak transcription	H1 Cell Line	embryonic stem cell
40	chr10:97171000-97175200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
41	chr10:97171000-97179200	Weak transcription	HUES48 Cell Line	embryonic stem cell
42	chr10:97171000-97186600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
43	chr10:97171000-97208000	Weak transcription	HUES64 Cell Line	embryonic stem cell
44	chr10:97171200-97173800	Weak transcription	Fetal Intestine Large	intestine
45	chr10:97171400-97173400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
46	chr10:97171600-97173800	Active TSS	Right Ventricle	heart
47	chr10:97171600-97175200	Active TSS	Left Ventricle	heart
48	chr10:97171800-97173400	Weak transcription	Aorta	Aorta
49	chr10:97171800-97173400	Active TSS	Right Atrium	heart
50	chr10:97172000-97173600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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