Variant report

Variant	rs7080545
Chromosome Location	chr10:97146448-97146449
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97140678..97143224-chr10:97145015..97146938,2	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1001875	1.00[ASW][hapmap];0.96[CEU][hapmap];0.89[CHB][hapmap];0.91[GIH][hapmap];0.98[MKK][hapmap];0.84[TSI][hapmap];0.83[YRI][hapmap];0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10882583	0.83[CHB][hapmap]
rs11188305	0.94[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs1887818	0.84[CEU][hapmap];0.83[CHB][hapmap]
rs2025851	0.87[ASW][hapmap];0.88[CEU][hapmap];0.83[CHB][hapmap];0.83[LWK][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs2274490	0.82[CEU][hapmap]
rs2861101	0.83[CHB][hapmap]
rs3896409	1.00[CEU][hapmap];0.94[CHB][hapmap];0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4244314	0.82[CEU][hapmap];0.83[CHB][hapmap]
rs4542335	0.88[CEU][hapmap]
rs4918921	0.82[CEU][hapmap]
rs6583995	0.88[CEU][hapmap];0.87[GIH][hapmap];0.80[MEX][hapmap];0.90[TSI][hapmap]
rs6583997	1.00[CEU][hapmap];0.94[CHB][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6583998	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];0.91[GIH][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];0.90[TSI][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7074224	0.88[CEU][hapmap];0.94[CHB][hapmap];0.82[LWK][hapmap];0.83[MKK][hapmap]
rs7090619	0.81[CEU][hapmap];0.91[GIH][hapmap]
rs71483997	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs943544	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[GIH][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs955759	0.88[CHB][hapmap]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs7080545	ANKRD2	cis	cerebellum	SCAN
rs7080545	PI4K2A	cis	cerebellum	SCAN
rs7080545	PPP1R3C	cis	parietal	SCAN

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97107200-97151800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:97109000-97148000	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr10:97121000-97148000	Weak transcription	Esophagus	oesophagus
4	chr10:97122000-97149400	Weak transcription	Spleen	Spleen
5	chr10:97130200-97156600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr10:97135600-97155600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr10:97137200-97147400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr10:97137200-97148000	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr10:97137800-97147400	Strong transcription	HepG2	liver
10	chr10:97137800-97156000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr10:97138200-97147200	Strong transcription	Skeletal Muscle Male	skeletal muscle
12	chr10:97138400-97147000	Strong transcription	Skeletal Muscle Female	skeletal muscle
13	chr10:97138400-97147400	Weak transcription	Right Atrium	heart
14	chr10:97140000-97148200	Weak transcription	Fetal Heart	heart
15	chr10:97140600-97158600	Weak transcription	HSMM	muscle
16	chr10:97140800-97147000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr10:97140800-97147200	Weak transcription	Brain Angular Gyrus	brain
18	chr10:97140800-97148000	Weak transcription	Duodenum Mucosa	Duodenum
19	chr10:97140800-97152400	Weak transcription	Colonic Mucosa	Colon
20	chr10:97141000-97147800	Weak transcription	Fetal Brain Male	brain
21	chr10:97142200-97147400	Weak transcription	Gastric	stomach
22	chr10:97142200-97147400	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr10:97142200-97151800	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr10:97142200-97152400	Weak transcription	Fetal Muscle Trunk	muscle
25	chr10:97142400-97147600	Weak transcription	Brain Substantia Nigra	brain
26	chr10:97142400-97152400	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr10:97142600-97155600	Weak transcription	Rectal Mucosa Donor 29	rectum
28	chr10:97143000-97148800	Weak transcription	Brain Germinal Matrix	brain
29	chr10:97143000-97151400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr10:97143200-97147200	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr10:97143400-97147400	Weak transcription	Brain Anterior Caudate	brain
32	chr10:97143600-97147000	Genic enhancers	Adipose Nuclei	Adipose
33	chr10:97143600-97151000	Weak transcription	Fetal Lung	lung
34	chr10:97143600-97151400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
35	chr10:97144000-97151600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
36	chr10:97144000-97152400	Weak transcription	HUES6 Cell Line	embryonic stem cell
37	chr10:97144000-97152400	Weak transcription	Psoas Muscle	Psoas
38	chr10:97144000-97155400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr10:97144200-97149400	Weak transcription	HSMMtube	muscle
40	chr10:97144200-97151600	Weak transcription	HUES48 Cell Line	embryonic stem cell
41	chr10:97144400-97147400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
42	chr10:97144400-97147400	Strong transcription	Left Ventricle	heart
43	chr10:97144400-97148200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr10:97144400-97149400	Weak transcription	Aorta	Aorta
45	chr10:97144400-97152400	Weak transcription	Ovary	ovary
46	chr10:97144400-97154000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr10:97144400-97155600	Weak transcription	HUES64 Cell Line	embryonic stem cell
48	chr10:97144600-97147400	Weak transcription	Duodenum Smooth Muscle	Duodenum
49	chr10:97144600-97149600	Weak transcription	Lung	lung
50	chr10:97144800-97148000	Weak transcription	Rectal Smooth Muscle	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links