Variant report

Variant	rs6583995
Chromosome Location	chr10:97110879-97110880
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97110313..97112983-chr10:97116773..97120494,3	K562	blood:
2	chr10:97110313..97112441-chr10:97116773..97119472,2	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1001875	0.84[CEU][hapmap];0.89[CHB][hapmap];0.95[GIH][hapmap];0.81[JPT][hapmap];0.93[TSI][hapmap];0.80[EUR][1000 genomes]
rs10882583	0.85[CEU][hapmap];0.94[CHB][hapmap];0.94[CHD][hapmap];0.94[JPT][hapmap];0.82[MEX][hapmap];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1410602	0.84[CHD][hapmap]
rs1887818	0.94[CHB][hapmap];0.87[JPT][hapmap];0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2025851	0.94[CHB][hapmap];0.83[CHD][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs2274629	0.84[CHD][hapmap]
rs2861101	0.94[CHB][hapmap];0.82[JPT][hapmap];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3850692	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3896409	0.88[CEU][hapmap];0.83[CHB][hapmap];0.80[JPT][hapmap];0.87[EUR][1000 genomes]
rs4244314	0.92[CEU][hapmap];0.94[CHB][hapmap];0.87[JPT][hapmap];0.83[YRI][hapmap];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4542335	0.84[CEU][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4918911	1.00[CHB][hapmap];0.83[JPT][hapmap];0.83[YRI][hapmap];0.93[ASN][1000 genomes]
rs6583997	0.88[CEU][hapmap];0.83[CHB][hapmap];0.81[JPT][hapmap];0.87[EUR][1000 genomes]
rs6583998	0.88[CEU][hapmap];0.83[CHB][hapmap];0.95[GIH][hapmap];0.81[JPT][hapmap];0.80[MEX][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes]
rs7074224	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs7080061	0.84[CHD][hapmap]
rs7080545	0.88[CEU][hapmap];0.87[GIH][hapmap];0.80[MEX][hapmap];0.90[TSI][hapmap]
rs7083399	0.82[CHD][hapmap]
rs7094816	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7096152	0.82[CHD][hapmap]
rs726176	0.84[CHD][hapmap]
rs7904517	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7914896	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs943544	0.88[CEU][hapmap];0.83[CHB][hapmap];0.87[GIH][hapmap];0.81[JPT][hapmap];0.80[MEX][hapmap];0.90[TSI][hapmap]
rs955759	0.88[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs6583995	ANKRD2	cis	cerebellum	SCAN
rs6583995	PI4K2A	cis	cerebellum	SCAN

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97070400-97139600	Weak transcription	Fetal Brain Male	brain
2	chr10:97087800-97115400	Weak transcription	Colonic Mucosa	Colon
3	chr10:97094600-97118000	Weak transcription	HSMM	muscle
4	chr10:97095000-97115200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr10:97097800-97116000	Weak transcription	Spleen	Spleen
6	chr10:97099200-97113400	Weak transcription	Ovary	ovary
7	chr10:97099200-97115200	Weak transcription	Esophagus	oesophagus
8	chr10:97099200-97129200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr10:97099400-97111000	Weak transcription	Brain Substantia Nigra	brain
10	chr10:97102200-97136400	Weak transcription	Fetal Kidney	kidney
11	chr10:97103400-97118000	Strong transcription	Fetal Brain Female	brain
12	chr10:97105000-97118200	Strong transcription	Aorta	Aorta
13	chr10:97106800-97112400	Weak transcription	GM12878-XiMat	blood
14	chr10:97106800-97114200	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr10:97107000-97115600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr10:97107200-97113600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr10:97107200-97113600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr10:97107200-97120200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr10:97107200-97151800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr10:97107600-97114000	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr10:97107600-97116000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr10:97107600-97116600	Genic enhancers	Adipose Nuclei	Adipose
23	chr10:97107600-97119800	Strong transcription	Fetal Stomach	stomach
24	chr10:97107800-97115000	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr10:97107800-97115200	Strong transcription	Left Ventricle	heart
26	chr10:97107800-97115400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr10:97107800-97119400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr10:97108200-97111600	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
29	chr10:97108400-97113800	Enhancers	Liver	Liver
30	chr10:97108400-97114600	Genic enhancers	Skeletal Muscle Male	skeletal muscle
31	chr10:97108600-97115800	Strong transcription	HSMMtube	muscle
32	chr10:97108600-97119200	Strong transcription	Cortex derived primary cultured neurospheres	brain
33	chr10:97108800-97114200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr10:97109000-97128200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr10:97109000-97148000	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr10:97109200-97120000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr10:97109800-97111200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr10:97110000-97111600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr10:97110000-97111600	Enhancers	HMEC	breast
40	chr10:97110000-97113200	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
41	chr10:97110000-97117400	Strong transcription	Brain Germinal Matrix	brain
42	chr10:97110200-97111000	Strong transcription	Brain Hippocampus Middle	brain
43	chr10:97110200-97111000	Enhancers	NHLF	lung
44	chr10:97110200-97111400	Enhancers	NHEK	skin
45	chr10:97110200-97111600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr10:97110200-97112600	Strong transcription	Brain Inferior Temporal Lobe	brain
47	chr10:97110400-97111000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr10:97110400-97111600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr10:97110400-97111600	Genic enhancers	Colon Smooth Muscle	Colon
50	chr10:97110400-97112800	Strong transcription	iPS-18 Cell Line	embryonic stem cell

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