Variant report

Variant	rs7096152
Chromosome Location	chr10:97113043-97113044
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97048384..97051804-chr10:97112721..97115504,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000107438	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10786203	0.98[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs11188287	0.95[CHB][hapmap];0.84[CHD][hapmap];0.95[JPT][hapmap];0.80[MEX][hapmap];0.93[ASN][1000 genomes]
rs1410602	0.85[ASW][hapmap];0.90[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.88[MKK][hapmap];0.89[TSI][hapmap];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1410603	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1536559	0.80[CEU][hapmap]
rs1536561	0.83[CEU][hapmap];0.82[JPT][hapmap]
rs1536562	0.81[CEU][hapmap]
rs2148891	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2274629	0.85[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.95[TSI][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2274630	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3758582	1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs6583994	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6583995	0.82[CHD][hapmap]
rs7069047	0.85[CHB][hapmap];0.90[JPT][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7080061	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7083399	0.85[ASW][hapmap];0.90[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.88[MKK][hapmap];0.89[TSI][hapmap];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7095858	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs726176	0.85[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];0.95[TSI][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7920051	0.93[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7096152	PDLIM1	cis	cerebellum	SCAN
rs7096152	RBP4	cis	parietal	SCAN

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97070400-97139600	Weak transcription	Fetal Brain Male	brain
2	chr10:97087800-97115400	Weak transcription	Colonic Mucosa	Colon
3	chr10:97094600-97118000	Weak transcription	HSMM	muscle
4	chr10:97095000-97115200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr10:97097800-97116000	Weak transcription	Spleen	Spleen
6	chr10:97099200-97113400	Weak transcription	Ovary	ovary
7	chr10:97099200-97115200	Weak transcription	Esophagus	oesophagus
8	chr10:97099200-97129200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr10:97102200-97136400	Weak transcription	Fetal Kidney	kidney
10	chr10:97103400-97118000	Strong transcription	Fetal Brain Female	brain
11	chr10:97105000-97118200	Strong transcription	Aorta	Aorta
12	chr10:97106800-97114200	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr10:97107000-97115600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr10:97107200-97113600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr10:97107200-97113600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr10:97107200-97120200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr10:97107200-97151800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr10:97107600-97114000	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr10:97107600-97116000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr10:97107600-97116600	Genic enhancers	Adipose Nuclei	Adipose
21	chr10:97107600-97119800	Strong transcription	Fetal Stomach	stomach
22	chr10:97107800-97115000	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr10:97107800-97115200	Strong transcription	Left Ventricle	heart
24	chr10:97107800-97115400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr10:97107800-97119400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr10:97108400-97113800	Enhancers	Liver	Liver
27	chr10:97108400-97114600	Genic enhancers	Skeletal Muscle Male	skeletal muscle
28	chr10:97108600-97115800	Strong transcription	HSMMtube	muscle
29	chr10:97108600-97119200	Strong transcription	Cortex derived primary cultured neurospheres	brain
30	chr10:97108800-97114200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr10:97109000-97128200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr10:97109000-97148000	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr10:97109200-97120000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr10:97110000-97113200	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
35	chr10:97110000-97117400	Strong transcription	Brain Germinal Matrix	brain
36	chr10:97110400-97114400	Genic enhancers	Skeletal Muscle Female	skeletal muscle
37	chr10:97110400-97116800	Strong transcription	Brain Cingulate Gyrus	brain
38	chr10:97110400-97116800	Strong transcription	Fetal Intestine Large	intestine
39	chr10:97110400-97116800	Strong transcription	Fetal Muscle Leg	muscle
40	chr10:97110600-97113800	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr10:97110600-97116800	Strong transcription	Brain Angular Gyrus	brain
42	chr10:97110600-97117200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr10:97110800-97115200	Strong transcription	Right Ventricle	heart
44	chr10:97111000-97114200	Weak transcription	Rectal Mucosa Donor 31	rectum
45	chr10:97111000-97114400	Weak transcription	Rectal Mucosa Donor 29	rectum
46	chr10:97111000-97115200	Weak transcription	H9 Cell Line	embryonic stem cell
47	chr10:97111000-97116400	Weak transcription	Fetal Heart	heart
48	chr10:97111000-97117400	Strong transcription	Brain Anterior Caudate	brain
49	chr10:97111000-97127400	Weak transcription	Duodenum Mucosa	Duodenum
50	chr10:97111200-97115000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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