Variant report

Variant	rs1536562
Chromosome Location	chr10:97160513-97160514
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97151153..97154334-chr10:97157587..97160682,3	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11188287	0.81[CHB][hapmap]
rs1536559	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1536561	1.00[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1536563	0.94[YRI][hapmap];0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2274488	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2274629	0.85[CEU][hapmap];0.81[CHB][hapmap]
rs7080061	0.81[CEU][hapmap]
rs7095858	0.81[CEU][hapmap]
rs7096152	0.81[CEU][hapmap]
rs726176	0.81[CEU][hapmap]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs1536562	TCTN3	cis	parietal	SCAN
rs1536562	ANKRD2	cis	parietal	SCAN
rs1536562	DNTT	cis	cerebellum	SCAN

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97146800-97168400	Weak transcription	Small Intestine	intestine
2	chr10:97150200-97163600	Weak transcription	Stomach Mucosa	stomach
3	chr10:97151000-97166200	Strong transcription	Liver	Liver
4	chr10:97151800-97168800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr10:97152000-97164200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr10:97153200-97162000	Strong transcription	Fetal Muscle Leg	muscle
7	chr10:97154400-97190800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr10:97154600-97168000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr10:97155200-97161600	Strong transcription	Brain Hippocampus Middle	brain
10	chr10:97155200-97161800	Genic enhancers	Left Ventricle	heart
11	chr10:97155200-97162000	Strong transcription	HepG2	liver
12	chr10:97155400-97161600	Strong transcription	Gastric	stomach
13	chr10:97155400-97168000	Strong transcription	Fetal Intestine Small	intestine
14	chr10:97155400-97170800	Enhancers	Right Atrium	heart
15	chr10:97155600-97161600	Weak transcription	HMEC	breast
16	chr10:97155600-97162000	Strong transcription	Placenta	Placenta
17	chr10:97156000-97166200	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr10:97156600-97162400	Genic enhancers	Colon Smooth Muscle	Colon
19	chr10:97156800-97163600	Strong transcription	Lung	lung
20	chr10:97156800-97164400	Weak transcription	Psoas Muscle	Psoas
21	chr10:97156800-97173400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr10:97156800-97182600	Weak transcription	Esophagus	oesophagus
23	chr10:97157000-97173200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr10:97157000-97174000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr10:97157000-97183200	Weak transcription	Colonic Mucosa	Colon
26	chr10:97157000-97190400	Weak transcription	Spleen	Spleen
27	chr10:97157600-97162400	Genic enhancers	Rectal Smooth Muscle	rectum
28	chr10:97157800-97162000	Genic enhancers	Right Ventricle	heart
29	chr10:97158200-97163800	Weak transcription	K562	blood
30	chr10:97158600-97199600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr10:97158800-97162000	Genic enhancers	Fetal Heart	heart
32	chr10:97158800-97163600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr10:97158800-97163600	Strong transcription	Skeletal Muscle Male	skeletal muscle
34	chr10:97158800-97164400	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr10:97158800-97165800	Weak transcription	Brain Germinal Matrix	brain
36	chr10:97158800-97166400	Weak transcription	Brain Substantia Nigra	brain
37	chr10:97159000-97161200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr10:97159000-97161400	Strong transcription	Skeletal Muscle Female	skeletal muscle
39	chr10:97159000-97161400	Genic enhancers	Stomach Smooth Muscle	stomach
40	chr10:97159000-97161400	Weak transcription	HSMMtube	muscle
41	chr10:97159000-97161800	Weak transcription	Ovary	ovary
42	chr10:97159000-97164400	Weak transcription	H1 Cell Line	embryonic stem cell
43	chr10:97159000-97164400	Weak transcription	Rectal Mucosa Donor 31	rectum
44	chr10:97159000-97164800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
45	chr10:97159000-97165400	Weak transcription	HUES48 Cell Line	embryonic stem cell
46	chr10:97159000-97165600	Weak transcription	HUES6 Cell Line	embryonic stem cell
47	chr10:97159000-97165600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr10:97159000-97165600	Weak transcription	Fetal Lung	lung
49	chr10:97159000-97166000	Weak transcription	Brain Angular Gyrus	brain
50	chr10:97159000-97166400	Weak transcription	Rectal Mucosa Donor 29	rectum

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