Variant report

Variant	rs2274488
Chromosome Location	chr10:97166103-97166104
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97161181..97166322-chr10:97166660..97170109,5	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1536559	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1536561	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1536562	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1536563	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97146800-97168400	Weak transcription	Small Intestine	intestine
2	chr10:97151000-97166200	Strong transcription	Liver	Liver
3	chr10:97151800-97168800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr10:97154400-97190800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr10:97154600-97168000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr10:97155400-97168000	Strong transcription	Fetal Intestine Small	intestine
7	chr10:97155400-97170800	Enhancers	Right Atrium	heart
8	chr10:97156000-97166200	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr10:97156800-97173400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr10:97156800-97182600	Weak transcription	Esophagus	oesophagus
11	chr10:97157000-97173200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr10:97157000-97174000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr10:97157000-97183200	Weak transcription	Colonic Mucosa	Colon
14	chr10:97157000-97190400	Weak transcription	Spleen	Spleen
15	chr10:97158600-97199600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr10:97158800-97166400	Weak transcription	Brain Substantia Nigra	brain
17	chr10:97159000-97166400	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr10:97159000-97166800	Weak transcription	Duodenum Mucosa	Duodenum
19	chr10:97159000-97167800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr10:97159000-97168000	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr10:97159000-97168000	Weak transcription	HSMM	muscle
22	chr10:97159200-97187000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr10:97159800-97167800	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr10:97160400-97166600	Weak transcription	Fetal Brain Male	brain
25	chr10:97160800-97166200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr10:97161800-97167800	Genic enhancers	Stomach Smooth Muscle	stomach
27	chr10:97162000-97168000	Weak transcription	Ovary	ovary
28	chr10:97162200-97166400	Weak transcription	HMEC	breast
29	chr10:97162800-97171000	Strong transcription	Placenta	Placenta
30	chr10:97162800-97171200	Strong transcription	Fetal Intestine Large	intestine
31	chr10:97163000-97169400	Genic enhancers	Left Ventricle	heart
32	chr10:97163800-97166800	Genic enhancers	Colon Smooth Muscle	Colon
33	chr10:97164000-97166600	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr10:97164000-97167000	Genic enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr10:97164000-97168200	Genic enhancers	Aorta	Aorta
36	chr10:97164000-97168600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr10:97164200-97168000	Genic enhancers	Adipose Nuclei	Adipose
38	chr10:97164400-97168200	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
39	chr10:97164400-97168200	Enhancers	Psoas Muscle	Psoas
40	chr10:97164600-97166400	Weak transcription	Brain Hippocampus Middle	brain
41	chr10:97164600-97166400	Genic enhancers	Right Ventricle	heart
42	chr10:97164600-97166400	Strong transcription	HSMMtube	muscle
43	chr10:97164600-97166800	Genic enhancers	Duodenum Smooth Muscle	Duodenum
44	chr10:97164800-97166400	Weak transcription	Brain Inferior Temporal Lobe	brain
45	chr10:97164800-97166600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr10:97164800-97168400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr10:97165000-97166400	Weak transcription	K562	blood
48	chr10:97165000-97166600	Weak transcription	Sigmoid Colon	Sigmoid Colon
49	chr10:97165000-97166800	Weak transcription	Lung	lung
50	chr10:97165000-97168000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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