Variant report

Variant	rs1887818
Chromosome Location	chr10:97092500-97092501
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97091158..97093235-chr10:97093326..97095164,2	K562	blood:
2	chr10:97089456..97092597-chr10:97097481..97100354,3	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1001875	0.84[CEU][hapmap];0.83[CHB][hapmap]
rs10882583	0.88[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.94[YRI][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1410601	0.80[JPT][hapmap];0.84[AMR][1000 genomes]
rs2025851	0.89[CHB][hapmap];0.80[JPT][hapmap]
rs2861101	1.00[CHB][hapmap];0.84[JPT][hapmap];0.94[YRI][hapmap];0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3193970	0.82[JPT][hapmap]
rs3850692	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3896409	0.84[CEU][hapmap];0.89[CHB][hapmap];0.82[JPT][hapmap]
rs4244314	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4542335	0.96[CEU][hapmap];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4918911	0.94[CHB][hapmap];0.84[JPT][hapmap];0.83[YRI][hapmap];0.82[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs6583995	0.94[CHB][hapmap];0.87[JPT][hapmap];0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6583997	0.84[CEU][hapmap];0.89[CHB][hapmap];0.83[JPT][hapmap]
rs6583998	0.84[CEU][hapmap];0.89[CHB][hapmap];0.81[JPT][hapmap]
rs7074224	0.89[CHB][hapmap];0.81[JPT][hapmap]
rs7080545	0.84[CEU][hapmap];0.83[CHB][hapmap]
rs7094816	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7904517	0.94[CHB][hapmap];0.87[JPT][hapmap];0.94[YRI][hapmap];0.88[ASN][1000 genomes]
rs7914896	0.94[CHB][hapmap];0.86[JPT][hapmap];0.94[YRI][hapmap];0.91[ASN][1000 genomes]
rs943544	0.84[CEU][hapmap];0.89[CHB][hapmap];0.81[JPT][hapmap]
rs955759	0.94[CHB][hapmap];0.94[JPT][hapmap];0.95[YRI][hapmap];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529726	chr10:96632494-97106315	Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97070400-97139600	Weak transcription	Fetal Brain Male	brain
2	chr10:97070800-97094200	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr10:97071000-97095800	Weak transcription	Pancreas	Pancrea
4	chr10:97071200-97098800	Weak transcription	Brain Substantia Nigra	brain
5	chr10:97073400-97092600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr10:97073400-97092800	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr10:97073600-97095200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr10:97074400-97095800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr10:97074600-97095800	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr10:97075200-97098800	Weak transcription	Ovary	ovary
11	chr10:97079400-97101400	Weak transcription	Fetal Kidney	kidney
12	chr10:97079400-97106400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr10:97080000-97099000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr10:97080000-97109600	Weak transcription	Fetal Lung	lung
15	chr10:97080400-97093200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr10:97080400-97106200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr10:97081800-97092600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr10:97083000-97098000	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr10:97083400-97093000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr10:97084400-97095600	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr10:97084600-97092600	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr10:97084800-97094200	Weak transcription	Brain Cingulate Gyrus	brain
23	chr10:97087600-97093800	Strong transcription	Placenta	Placenta
24	chr10:97087600-97094000	Weak transcription	Fetal Muscle Trunk	muscle
25	chr10:97087600-97094000	Weak transcription	Stomach Mucosa	stomach
26	chr10:97087800-97093800	Weak transcription	K562	blood
27	chr10:97087800-97095800	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr10:97087800-97097800	Weak transcription	Brain Hippocampus Middle	brain
29	chr10:97087800-97115400	Weak transcription	Colonic Mucosa	Colon
30	chr10:97088000-97093000	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr10:97088000-97093000	Weak transcription	Gastric	stomach
32	chr10:97088000-97110600	Weak transcription	Duodenum Mucosa	Duodenum
33	chr10:97088200-97093600	Strong transcription	Adipose Nuclei	Adipose
34	chr10:97088400-97095000	Weak transcription	Fetal Heart	heart
35	chr10:97089000-97096400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr10:97089200-97093600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
37	chr10:97089200-97097200	Weak transcription	Brain Angular Gyrus	brain
38	chr10:97089400-97094000	Weak transcription	Lung	lung
39	chr10:97089800-97092800	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr10:97090000-97094000	Strong transcription	Colon Smooth Muscle	Colon
41	chr10:97090800-97094000	Strong transcription	Fetal Muscle Leg	muscle
42	chr10:97090800-97094200	Strong transcription	Rectal Smooth Muscle	rectum
43	chr10:97090800-97094600	Genic enhancers	Skeletal Muscle Female	skeletal muscle
44	chr10:97091000-97093400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr10:97091000-97094000	Strong transcription	Fetal Stomach	stomach
46	chr10:97091000-97098000	Genic enhancers	Left Ventricle	heart
47	chr10:97091000-97102000	Strong transcription	Fetal Brain Female	brain
48	chr10:97091200-97093600	Weak transcription	NH-A	brain
49	chr10:97091200-97093600	Weak transcription	Osteobl	bone
50	chr10:97091200-97094000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland

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