Variant report

Variant	rs3193970
Chromosome Location	chr10:97072008-97072009
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97071593..97074402-chr10:97139756..97142626,2	K562	blood:
2	chr10:97071047..97076253-chr10:97076532..97079541,6	K562	blood:
3	chr10:97071603..97074212-chr10:97074276..97076848,4	K562	blood:
4	chr10:97054860..97057387-chr10:97070796..97073546,2	K562	blood:
5	chr10:97048197..97050132-chr10:97070905..97072692,2	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs1887818	0.82[JPT][hapmap]
rs4244314	0.83[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529726	chr10:96632494-97106315	Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	esv15160	chr10:96942869-97074756	Bivalent Enhancer Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3193970	PPP1R3C	cis	parietal	SCAN

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97055600-97072800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr10:97063400-97072400	Weak transcription	Fetal Brain Female	brain
3	chr10:97063400-97073600	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr10:97064000-97073200	Weak transcription	Fetal Muscle Leg	muscle
5	chr10:97064600-97078200	Weak transcription	Colonic Mucosa	Colon
6	chr10:97066000-97073000	Weak transcription	Fetal Intestine Large	intestine
7	chr10:97066000-97073600	Weak transcription	Fetal Intestine Small	intestine
8	chr10:97067200-97073400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr10:97068400-97072200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr10:97068600-97072800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr10:97068600-97073800	Weak transcription	Brain Angular Gyrus	brain
12	chr10:97069000-97072400	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr10:97069000-97073000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr10:97069000-97073200	Weak transcription	Brain Cingulate Gyrus	brain
15	chr10:97069000-97073400	Weak transcription	Fetal Muscle Trunk	muscle
16	chr10:97069000-97073600	Weak transcription	HepG2	liver
17	chr10:97069000-97075600	Enhancers	K562	blood
18	chr10:97069200-97072200	Weak transcription	HUVEC	blood vessel
19	chr10:97069200-97072600	Weak transcription	Psoas Muscle	Psoas
20	chr10:97069200-97072600	Weak transcription	HSMMtube	muscle
21	chr10:97069200-97087000	Weak transcription	HSMM	muscle
22	chr10:97069400-97072400	Weak transcription	Left Ventricle	heart
23	chr10:97069400-97072600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr10:97069400-97074000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr10:97069600-97073000	Weak transcription	Fetal Stomach	stomach
26	chr10:97069600-97073800	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr10:97069800-97072200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr10:97069800-97075200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr10:97070000-97073000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr10:97070200-97072600	Weak transcription	Stomach Smooth Muscle	stomach
31	chr10:97070200-97072600	Weak transcription	A549	lung
32	chr10:97070200-97073200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
33	chr10:97070200-97074000	Enhancers	HUES64 Cell Line	embryonic stem cell
34	chr10:97070200-97074200	Enhancers	Fetal Heart	heart
35	chr10:97070400-97072200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr10:97070400-97072200	Weak transcription	Colon Smooth Muscle	Colon
37	chr10:97070400-97072400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr10:97070400-97073200	Weak transcription	Brain Germinal Matrix	brain
39	chr10:97070400-97139600	Weak transcription	Fetal Brain Male	brain
40	chr10:97070600-97072200	Weak transcription	Placenta	Placenta
41	chr10:97070600-97072200	Weak transcription	Rectal Smooth Muscle	rectum
42	chr10:97070600-97072400	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr10:97070600-97072600	Weak transcription	Liver	Liver
44	chr10:97070800-97072200	Weak transcription	Stomach Mucosa	stomach
45	chr10:97070800-97072600	Weak transcription	Brain Anterior Caudate	brain
46	chr10:97070800-97073400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
47	chr10:97070800-97074000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr10:97070800-97085800	Weak transcription	Small Intestine	intestine
49	chr10:97070800-97094200	Weak transcription	Rectal Mucosa Donor 31	rectum
50	chr10:97071000-97072200	Weak transcription	H1 Cell Line	embryonic stem cell

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