Variant report

Variant	rs7094140
Chromosome Location	chr10:97219931-97219932
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs2148892	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2274491	0.81[CEU][hapmap];0.94[CHB][hapmap];0.89[JPT][hapmap];0.85[ASN][1000 genomes]
rs3896409	0.83[YRI][hapmap]
rs4918930	0.85[ASN][1000 genomes]
rs4918937	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs533232	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs540746	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs549062	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs554765	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs557941	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs564370	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7074761	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7899065	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7913557	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7913770	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs815313	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045002	chr10:97214418-97250630	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97206000-97220000	Enhancers	Rectal Smooth Muscle	rectum
2	chr10:97213200-97234200	Weak transcription	Colonic Mucosa	Colon
3	chr10:97216000-97223000	Weak transcription	Pancreas	Pancrea
4	chr10:97216000-97226800	Weak transcription	Duodenum Mucosa	Duodenum
5	chr10:97216000-97228200	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr10:97216200-97220000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr10:97217600-97223000	Weak transcription	Placenta	Placenta
8	chr10:97217600-97223000	Weak transcription	Gastric	stomach
9	chr10:97218000-97229600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr10:97218200-97220000	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr10:97218200-97222000	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr10:97218400-97220200	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr10:97218600-97220000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr10:97218800-97220000	Enhancers	Brain Cingulate Gyrus	brain
15	chr10:97219000-97220000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr10:97219000-97220000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr10:97219000-97220000	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr10:97219000-97220000	Enhancers	Fetal Muscle Leg	muscle
19	chr10:97219000-97220000	Genic enhancers	Left Ventricle	heart
20	chr10:97219000-97220000	Enhancers	Skeletal Muscle Female	skeletal muscle
21	chr10:97219000-97220400	Enhancers	Psoas Muscle	Psoas
22	chr10:97219000-97220400	Enhancers	Right Atrium	heart
23	chr10:97219000-97221000	Enhancers	iPS-20b Cell Line	embryonic stem cell
24	chr10:97219000-97222000	Enhancers	H1 Cell Line	embryonic stem cell
25	chr10:97219000-97223200	Enhancers	iPS-15b Cell Line	embryonic stem cell
26	chr10:97219200-97220000	Enhancers	Right Ventricle	heart
27	chr10:97219200-97221600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
28	chr10:97219200-97223000	Weak transcription	Lung	lung
29	chr10:97219400-97220000	Genic enhancers	Fetal Stomach	stomach
30	chr10:97219400-97221600	Enhancers	Fetal Lung	lung
31	chr10:97219600-97220000	Genic enhancers	ES-I3 Cell Line	embryonic stem cell
32	chr10:97219600-97220000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
33	chr10:97219600-97220000	Flanking Active TSS	Fetal Brain Male	brain
34	chr10:97219600-97223000	Weak transcription	HSMMtube	muscle
35	chr10:97219600-97223200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr10:97219600-97224200	Weak transcription	Stomach Mucosa	stomach
37	chr10:97219600-97225800	Weak transcription	Brain Germinal Matrix	brain
38	chr10:97219800-97220000	Enhancers	Fetal Kidney	kidney
39	chr10:97219800-97220200	Enhancers	Fetal Heart	heart
40	chr10:97219800-97220800	Weak transcription	HUES6 Cell Line	embryonic stem cell
41	chr10:97219800-97220800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
42	chr10:97219800-97220800	Weak transcription	Colon Smooth Muscle	Colon
43	chr10:97219800-97221000	Weak transcription	Liver	Liver
44	chr10:97219800-97221000	Weak transcription	Brain Hippocampus Middle	brain
45	chr10:97219800-97221000	Weak transcription	Fetal Brain Female	brain
46	chr10:97219800-97221200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr10:97219800-97221200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr10:97219800-97221200	Weak transcription	Aorta	Aorta
49	chr10:97219800-97221200	Enhancers	Stomach Smooth Muscle	stomach
50	chr10:97219800-97221200	Enhancers	HepG2	liver

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