Variant report

Variant	rs557941
Chromosome Location	chr10:97225831-97225832
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97210894..97213718-chr10:97224956..97226923,2	K562	blood:
2	chr10:97220624..97225860-chr10:97227541..97231131,6	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs2148892	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2274491	0.84[ASN][1000 genomes]
rs4918930	0.84[ASN][1000 genomes]
rs4918937	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs533232	0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs540746	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs549062	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs554765	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs564370	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7074761	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7094140	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7899065	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7913557	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7913770	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs815313	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045002	chr10:97214418-97250630	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97213200-97234200	Weak transcription	Colonic Mucosa	Colon
2	chr10:97216000-97226800	Weak transcription	Duodenum Mucosa	Duodenum
3	chr10:97216000-97228200	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr10:97218000-97229600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr10:97219800-97229600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr10:97220600-97232000	Enhancers	Fetal Heart	heart
7	chr10:97221600-97226200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr10:97221800-97226200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr10:97221800-97226200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr10:97222800-97226400	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr10:97223000-97226400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr10:97223200-97226400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr10:97223200-97227000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr10:97223200-97228000	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr10:97223200-97229600	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr10:97223200-97230200	Enhancers	Fetal Brain Male	brain
17	chr10:97223200-97234000	Weak transcription	Ovary	ovary
18	chr10:97223400-97226400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr10:97223600-97226200	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr10:97223600-97226200	Weak transcription	Fetal Lung	lung
21	chr10:97223600-97227000	Weak transcription	Gastric	stomach
22	chr10:97223600-97229200	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr10:97223800-97226400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr10:97223800-97226400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr10:97223800-97226400	Weak transcription	Placenta	Placenta
26	chr10:97223800-97226600	Weak transcription	Fetal Stomach	stomach
27	chr10:97223800-97227000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr10:97223800-97227000	Weak transcription	HSMMtube	muscle
29	chr10:97224000-97229600	Weak transcription	Lung	lung
30	chr10:97224200-97227000	Weak transcription	Fetal Muscle Trunk	muscle
31	chr10:97224400-97227000	Weak transcription	Right Atrium	heart
32	chr10:97224600-97227000	Weak transcription	Stomach Mucosa	stomach
33	chr10:97224600-97229400	Weak transcription	Aorta	Aorta
34	chr10:97224800-97226200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr10:97224800-97226400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr10:97224800-97226400	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr10:97224800-97226600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
38	chr10:97224800-97226800	Weak transcription	Liver	Liver
39	chr10:97224800-97226800	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr10:97224800-97227000	Weak transcription	Fetal Muscle Leg	muscle
41	chr10:97224800-97227000	Weak transcription	Left Ventricle	heart
42	chr10:97224800-97227000	Weak transcription	Pancreas	Pancrea
43	chr10:97224800-97227000	Weak transcription	Psoas Muscle	Psoas
44	chr10:97224800-97229400	Weak transcription	Brain Hippocampus Middle	brain
45	chr10:97224800-97229600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr10:97224800-97237000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr10:97225000-97226200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
48	chr10:97225000-97226200	Weak transcription	Brain Cingulate Gyrus	brain
49	chr10:97225000-97226200	Weak transcription	HepG2	liver
50	chr10:97225000-97226400	Weak transcription	HUES6 Cell Line	embryonic stem cell

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