Variant report

Variant	rs2148892
Chromosome Location	chr10:97215511-97215512
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97196672..97199755-chr10:97214969..97217951,3	K562	blood:
2	chr10:97208296..97210918-chr10:97214931..97216781,2	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs2274491	0.81[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs4918930	0.81[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs4918937	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs533232	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs540746	0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs549062	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs554765	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs557941	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs564370	0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7074761	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7094140	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7899065	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7913557	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7913770	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs815313	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045002	chr10:97214418-97250630	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97206000-97217000	Weak transcription	Gastric	stomach
2	chr10:97206000-97220000	Enhancers	Rectal Smooth Muscle	rectum
3	chr10:97206200-97219000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr10:97208000-97216000	Weak transcription	Brain Cingulate Gyrus	brain
5	chr10:97208200-97216200	Weak transcription	Lung	lung
6	chr10:97208200-97219000	Weak transcription	Ovary	ovary
7	chr10:97208200-97219000	Weak transcription	HSMMtube	muscle
8	chr10:97208600-97216600	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr10:97208800-97215800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr10:97208800-97215800	Weak transcription	Fetal Kidney	kidney
11	chr10:97209200-97215600	Weak transcription	Right Ventricle	heart
12	chr10:97209200-97219200	Weak transcription	Fetal Muscle Trunk	muscle
13	chr10:97210000-97219400	Enhancers	Colon Smooth Muscle	Colon
14	chr10:97211200-97216600	Weak transcription	Brain Hippocampus Middle	brain
15	chr10:97211200-97217400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr10:97211400-97219000	Weak transcription	Brain Angular Gyrus	brain
17	chr10:97211400-97219000	Weak transcription	Brain Germinal Matrix	brain
18	chr10:97211600-97215800	Weak transcription	Fetal Intestine Large	intestine
19	chr10:97211600-97217000	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr10:97211800-97215800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr10:97211800-97217000	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr10:97211800-97219000	Weak transcription	Fetal Muscle Leg	muscle
23	chr10:97212000-97215600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr10:97212200-97215800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr10:97212200-97215800	Weak transcription	Fetal Intestine Small	intestine
26	chr10:97212200-97215800	Weak transcription	Fetal Lung	lung
27	chr10:97212200-97215800	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr10:97212200-97216000	Weak transcription	NHEK	skin
29	chr10:97212200-97216200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr10:97212200-97216200	Weak transcription	Fetal Stomach	stomach
31	chr10:97212200-97216600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr10:97212200-97219000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr10:97212400-97215800	Weak transcription	HMEC	breast
34	chr10:97212800-97216000	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr10:97212800-97216200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr10:97212800-97217400	Weak transcription	Right Atrium	heart
37	chr10:97213000-97216200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr10:97213000-97217200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr10:97213200-97234200	Weak transcription	Colonic Mucosa	Colon
40	chr10:97213600-97219000	Weak transcription	Psoas Muscle	Psoas
41	chr10:97213800-97219800	Enhancers	Brain Anterior Caudate	brain
42	chr10:97213800-97219800	Enhancers	Duodenum Smooth Muscle	Duodenum
43	chr10:97214000-97215600	Weak transcription	Liver	Liver
44	chr10:97214000-97215800	Enhancers	Stomach Smooth Muscle	stomach
45	chr10:97214200-97219000	Enhancers	Breast Myoepithelial Primary Cells	Breast
46	chr10:97214400-97216200	Weak transcription	Left Ventricle	heart
47	chr10:97214400-97216800	Weak transcription	Brain Substantia Nigra	brain
48	chr10:97214400-97219000	Enhancers	Fetal Heart	heart
49	chr10:97214600-97219000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr10:97214800-97216600	Enhancers	HepG2	liver

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