Variant report

Variant	rs564370
Chromosome Location	chr10:97226510-97226511
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97210894..97213718-chr10:97224956..97226923,2	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs2148892	0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2274491	0.94[CHB][hapmap];0.89[JPT][hapmap];0.84[ASN][1000 genomes]
rs4918930	0.84[ASN][1000 genomes]
rs4918937	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs533232	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs540746	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs549062	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.93[TSI][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs554765	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs557941	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7074761	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7094140	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7899065	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7913557	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7913770	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.93[TSI][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs815313	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045002	chr10:97214418-97250630	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs564370	RPL13AP5	cis	parietal	SCAN

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97213200-97234200	Weak transcription	Colonic Mucosa	Colon
2	chr10:97216000-97226800	Weak transcription	Duodenum Mucosa	Duodenum
3	chr10:97216000-97228200	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr10:97218000-97229600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr10:97219800-97229600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr10:97220600-97232000	Enhancers	Fetal Heart	heart
7	chr10:97223200-97227000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr10:97223200-97228000	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr10:97223200-97229600	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr10:97223200-97230200	Enhancers	Fetal Brain Male	brain
11	chr10:97223200-97234000	Weak transcription	Ovary	ovary
12	chr10:97223600-97227000	Weak transcription	Gastric	stomach
13	chr10:97223600-97229200	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr10:97223800-97226600	Weak transcription	Fetal Stomach	stomach
15	chr10:97223800-97227000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr10:97223800-97227000	Weak transcription	HSMMtube	muscle
17	chr10:97224000-97229600	Weak transcription	Lung	lung
18	chr10:97224200-97227000	Weak transcription	Fetal Muscle Trunk	muscle
19	chr10:97224400-97227000	Weak transcription	Right Atrium	heart
20	chr10:97224600-97227000	Weak transcription	Stomach Mucosa	stomach
21	chr10:97224600-97229400	Weak transcription	Aorta	Aorta
22	chr10:97224800-97226600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr10:97224800-97226800	Weak transcription	Liver	Liver
24	chr10:97224800-97226800	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr10:97224800-97227000	Weak transcription	Fetal Muscle Leg	muscle
26	chr10:97224800-97227000	Weak transcription	Left Ventricle	heart
27	chr10:97224800-97227000	Weak transcription	Pancreas	Pancrea
28	chr10:97224800-97227000	Weak transcription	Psoas Muscle	Psoas
29	chr10:97224800-97229400	Weak transcription	Brain Hippocampus Middle	brain
30	chr10:97224800-97229600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr10:97224800-97237000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr10:97225000-97226800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr10:97225000-97226800	Weak transcription	Fetal Brain Female	brain
34	chr10:97225000-97227000	Weak transcription	Right Ventricle	heart
35	chr10:97225000-97227800	Weak transcription	Rectal Mucosa Donor 29	rectum
36	chr10:97225000-97228000	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr10:97225000-97228200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr10:97225000-97228400	Weak transcription	Rectal Mucosa Donor 31	rectum
39	chr10:97225000-97228600	Weak transcription	Brain Substantia Nigra	brain
40	chr10:97225000-97229200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
41	chr10:97225000-97229600	Weak transcription	Brain Angular Gyrus	brain
42	chr10:97225800-97227000	Weak transcription	Stomach Smooth Muscle	stomach
43	chr10:97226200-97227400	Enhancers	Primary hematopoietic stem cells	blood
44	chr10:97226200-97227400	Enhancers	Primary hematopoietic stem cells short term culture	blood
45	chr10:97226200-97227400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr10:97226200-97227400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr10:97226200-97227400	Enhancers	Fetal Lung	lung
48	chr10:97226200-97227600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
49	chr10:97226200-97227600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr10:97226200-97227600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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