Variant report

Variant	rs10786314
Chromosome Location	chr10:98672770-98672771
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:98672007..98674057-chr10:98676669..98679215,2	MCF-7	breast:
2	chr10:98592597..98594395-chr10:98671639..98674346,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000196233	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10786313	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs2805593	1.00[AMR][1000 genomes]
rs59070724	1.00[AMR][1000 genomes]
rs684211	1.00[AMR][1000 genomes]
rs9419829	1.00[AMR][1000 genomes]
rs9420702	1.00[YRI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532232	chr10:98360775-99141797	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv527351	chr10:98667529-98673807	Strong transcription Weak transcription Enhancers Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98611000-98713000	Weak transcription	Aorta	Aorta
2	chr10:98624800-98696000	Weak transcription	K562	blood
3	chr10:98636800-98683400	Weak transcription	Osteobl	bone
4	chr10:98637400-98708800	Weak transcription	NH-A	brain
5	chr10:98639800-98714600	Weak transcription	Esophagus	oesophagus
6	chr10:98640600-98714600	Weak transcription	Hela-S3	cervix
7	chr10:98644800-98674600	Weak transcription	Spleen	Spleen
8	chr10:98644800-98681400	Weak transcription	Right Ventricle	heart
9	chr10:98645400-98678000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr10:98650200-98673400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr10:98650200-98674600	Weak transcription	Thymus	Thymus
12	chr10:98650200-98708800	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr10:98652000-98673600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr10:98652600-98673600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr10:98652600-98674800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr10:98653400-98675200	Weak transcription	Primary hematopoietic stem cells	blood
17	chr10:98653400-98714200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr10:98654200-98675400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr10:98656000-98675400	Weak transcription	Pancreas	Pancrea
20	chr10:98657400-98673200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr10:98657400-98705800	Weak transcription	NHDF-Ad	bronchial
22	chr10:98659000-98714600	Weak transcription	Rectal Smooth Muscle	rectum
23	chr10:98661600-98675400	Weak transcription	Fetal Muscle Leg	muscle
24	chr10:98661800-98678000	Weak transcription	Right Atrium	heart
25	chr10:98661800-98680600	Weak transcription	Left Ventricle	heart
26	chr10:98662800-98687600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr10:98663000-98674600	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr10:98663000-98688000	Weak transcription	Adipose Nuclei	Adipose
29	chr10:98663000-98695000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
30	chr10:98663000-98720400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
31	chr10:98663400-98691200	Weak transcription	Small Intestine	intestine
32	chr10:98663600-98678000	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr10:98663600-98689400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
34	chr10:98663600-98714800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr10:98663800-98673200	Weak transcription	Rectal Mucosa Donor 29	rectum
36	chr10:98664400-98678000	Weak transcription	Gastric	stomach
37	chr10:98664400-98678200	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr10:98664400-98696400	Weak transcription	NHLF	lung
39	chr10:98664600-98674200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr10:98664800-98714000	Weak transcription	Colonic Mucosa	Colon
41	chr10:98665000-98714800	Weak transcription	Colon Smooth Muscle	Colon
42	chr10:98665400-98674000	Weak transcription	Brain Germinal Matrix	brain
43	chr10:98665800-98673400	Weak transcription	Placenta	Placenta
44	chr10:98666000-98686000	Weak transcription	NHEK	skin
45	chr10:98666000-98714600	Weak transcription	Fetal Brain Female	brain
46	chr10:98666200-98673200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr10:98666200-98680600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
48	chr10:98666800-98674400	Weak transcription	Fetal Muscle Trunk	muscle
49	chr10:98666800-98687800	Weak transcription	HUVEC	blood vessel
50	chr10:98667000-98673600	Weak transcription	Fetal Heart	heart

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