Variant report

Variant	rs684211
Chromosome Location	chr10:98460182-98460183
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10786298	1.00[AMR][1000 genomes]
rs10786313	1.00[AMR][1000 genomes]
rs10786314	1.00[AMR][1000 genomes]
rs10882814	1.00[AMR][1000 genomes]
rs10882824	1.00[AMR][1000 genomes]
rs11188819	1.00[AMR][1000 genomes]
rs11188836	1.00[AMR][1000 genomes]
rs1156488	1.00[AMR][1000 genomes]
rs1408365	1.00[AMR][1000 genomes]
rs1408366	1.00[AMR][1000 genomes]
rs2181842	1.00[AMR][1000 genomes]
rs4917741	1.00[AMR][1000 genomes]
rs4919035	1.00[AMR][1000 genomes]
rs4919047	1.00[AMR][1000 genomes]
rs4919049	1.00[AMR][1000 genomes]
rs4919050	1.00[AMR][1000 genomes]
rs521787	0.95[AFR][1000 genomes]
rs6584087	1.00[AMR][1000 genomes]
rs7068211	1.00[AMR][1000 genomes]
rs7070088	1.00[AMR][1000 genomes]
rs7089654	1.00[AMR][1000 genomes]
rs7094142	1.00[AMR][1000 genomes]
rs7099800	1.00[AMR][1000 genomes]
rs7894537	1.00[AMR][1000 genomes]
rs7894814	1.00[AMR][1000 genomes]
rs7895501	1.00[AMR][1000 genomes]
rs7895746	1.00[AMR][1000 genomes]
rs7903410	1.00[AMR][1000 genomes]
rs7918128	1.00[AMR][1000 genomes]
rs912481	1.00[AMR][1000 genomes]
rs912483	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv532232	chr10:98360775-99141797	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
3	nsv895910	chr10:98386483-98640994	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
4	nsv895911	chr10:98427049-98469693	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv508601	chr10:98437890-98534321	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98451200-98461000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr10:98451200-98468400	Weak transcription	Pancreas	Pancrea
3	chr10:98456000-98469200	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr10:98457200-98461000	Weak transcription	K562	blood
5	chr10:98457200-98478000	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr10:98458000-98460400	Active TSS	GM12878-XiMat	blood
7	chr10:98459000-98460400	Flanking Active TSS	Primary B cells from cord blood	blood
8	chr10:98459200-98460200	Enhancers	Primary neutrophils fromperipheralblood	blood
9	chr10:98459200-98460400	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr10:98459400-98460200	Enhancers	Adipose Nuclei	Adipose
11	chr10:98459400-98460200	Active TSS	Spleen	Spleen
12	chr10:98459600-98460200	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
13	chr10:98459600-98460600	Active TSS	Rectal Mucosa Donor 29	rectum
14	chr10:98459800-98460200	Enhancers	Brain Hippocampus Middle	brain
15	chr10:98459800-98460200	Active TSS	Rectal Smooth Muscle	rectum
16	chr10:98459800-98460600	Transcr. at gene 5' and 3'	Primary hematopoietic stem cells short term culture	blood
17	chr10:98459800-98460800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr10:98459800-98461000	Transcr. at gene 5' and 3'	Primary Natural Killer cells fromperipheralblood	blood
19	chr10:98459800-98461000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
20	chr10:98459800-98461200	Enhancers	Fetal Thymus	thymus
21	chr10:98460000-98460200	Flanking Active TSS	Duodenum Mucosa	Duodenum
22	chr10:98460000-98460600	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr10:98460000-98460600	Flanking Active TSS	Primary hematopoietic stem cells	blood
24	chr10:98460000-98460800	Active TSS	Primary B cells from peripheral blood	blood
25	chr10:98460000-98460800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr10:98460000-98460800	Enhancers	Lung	lung
27	chr10:98460000-98462200	Strong transcription	Liver	Liver

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