Variant report

Variant	rs1408365
Chromosome Location	chr10:98273758-98273759
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	UBTF	chr10:98273339-98274091	K562	blood:	n/a	n/a
2	PML	chr10:98273084-98274034	GM12878	blood:	n/a	n/a
3	MYC	chr10:98273575-98274298	MCF10A-Er-Src	breast:	n/a	chr10:98274018-98274027
4	TAF1	chr10:98272882-98274013	ECC-1	luminal epithelium:	n/a	n/a
5	POLR2A	chr10:98273385-98274215	U87	brain:	n/a	n/a
6	HA-E2F1	chr10:98273359-98274366	MCF-7	breast:	n/a	chr10:98273870-98273880 chr10:98273770-98273779
7	CEBPB	chr10:98273655-98273966	IMR90	lung:	n/a	chr10:98273771-98273779
8	POLR2A	chr10:98273375-98273940	HCT-116	colon:	n/a	n/a
9	CHD1	chr10:98273746-98273773	GM12878	blood:	n/a	n/a
10	CTCF	chr10:98273337-98273843	GM12878	blood:	n/a	chr10:98273728-98273737
11	PBX3	chr10:98273696-98273836	GM12878	blood:	n/a	n/a
12	RAD21	chr10:98273333-98273799	H1-hESC	embryonic stem cell:	n/a	n/a
13	MAX	chr10:98273235-98274356	HepG2	liver:	n/a	chr10:98274018-98274027
14	MAX	chr10:98273256-98274064	HepG2	liver:	n/a	chr10:98274018-98274027
15	MYC	chr10:98273505-98274243	K562	blood:	n/a	chr10:98274018-98274027
16	POLR2A	chr10:98273447-98273764	MCF10A-Er-Src	breast:	n/a	n/a
17	CTCF	chr10:98273418-98273759	H1-hESC	embryonic stem cell:	n/a	chr10:98273728-98273737
18	CTCF	chr10:98273409-98273777	T-47D	breast:	n/a	chr10:98273728-98273737
19	MYC	chr10:98273466-98274278	K562	blood:	n/a	chr10:98274018-98274027
20	SMC3	chr10:98273471-98273798	GM12878	blood:	n/a	n/a
21	MAX	chr10:98273226-98274398	MCF-7	breast:	n/a	chr10:98274018-98274027
22	STAT3	chr10:98273625-98274527	MCF10A-Er-Src	breast:	n/a	chr10:98273807-98273818 chr10:98273985-98273992
23	TBP	chr10:98273633-98274019	HepG2	liver:	n/a	n/a
24	TAF1	chr10:98272854-98274102	ECC-1	luminal epithelium:	n/a	n/a
25	E2F6	chr10:98273069-98274477	H1-hESC	embryonic stem cell:	n/a	chr10:98273870-98273880 chr10:98273770-98273779
26	TCF3	chr10:98273138-98273956	GM12878	blood:	n/a	n/a
27	MAX	chr10:98273368-98274241	MCF-7	breast:	n/a	chr10:98274018-98274027
28	E2F6	chr10:98273389-98274390	A549	lung:	n/a	chr10:98273870-98273880 chr10:98273770-98273779
29	POLR2A	chr10:98273535-98274453	SK-N-SH	brain:	n/a	n/a
30	YY1	chr10:98273449-98273786	H1-hESC	embryonic stem cell:	n/a	n/a
31	USF1	chr10:98273225-98274261	ECC-1	luminal epithelium:	n/a	n/a
32	POLR2A	chr10:98273264-98274101	H1-neurons	neurons:	n/a	n/a
33	TCF7L2	chr10:98273089-98273803	HCT-116	colon:	n/a	chr10:98273223-98273230
34	ZBTB7A	chr10:98273668-98273845	K562	blood:	n/a	n/a
35	RCOR1	chr10:98273488-98274345	HepG2	liver:	n/a	n/a
36	POLR2A	chr10:98273322-98274075	ECC-1	luminal epithelium:	n/a	n/a
37	CTCF	chr10:98273003-98274651	A549	lung:	n/a	chr10:98273728-98273737 chr10:98273051-98273061 chr10:98274254-98274261
38	POLR2A	chr10:98273552-98274393	GM12878	blood:	n/a	n/a
39	POLR2A	chr10:98273509-98273783	A549	lung:	n/a	n/a
40	TBP	chr10:98273099-98274273	H1-hESC	embryonic stem cell:	n/a	n/a
41	JUND	chr10:98273390-98274149	A549	lung:	n/a	n/a
42	EP300	chr10:98273524-98273805	SK-N-SH_RA	brain:	n/a	n/a
43	CEBPB	chr10:98273695-98273972	HepG2	liver:	n/a	chr10:98273771-98273779
44	YY1	chr10:98273311-98273949	ECC-1	luminal epithelium:	n/a	n/a
45	FOXP2	chr10:98273206-98273924	PFSK-1	brain:	n/a	n/a
46	STAT3	chr10:98273623-98274105	MCF10A-Er-Src	breast:	n/a	chr10:98273807-98273818 chr10:98273985-98273992
47	SP1	chr10:98273502-98274307	H1-hESC	embryonic stem cell:	n/a	chr10:98273799-98273813
48	POLR2A	chr10:98273420-98274052	HUVEC	blood vessel:	n/a	n/a
49	CTCF	chr10:98273112-98273968	HCT-116	colon:	n/a	chr10:98273728-98273737
50	POLR2A	chr10:98273391-98274087	ProgFib	skin:	n/a	n/a

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr10:98273714-98273764	SK-N-SH	brain:	n/a
2	chr10:98273719-98273769	MCF-7	breast:	n/a
3	chr10:98273714-98273764	A549	lung:	n/a
4	chr10:98273714-98273764	SKMC	muscle:	n/a
5	chr10:98273714-98273764	PFSK-1	brain:	n/a
6	chr10:98273714-98273764	ECC-1	luminal epithelium:	n/a
7	chr10:98273714-98273764	PANC-1	pancreas:	n/a
8	chr10:98273714-98273764	Hela-S3	cervix:	n/a
9	chr10:98273719-98273769	LNCaP	prostate:	n/a
10	chr10:98273719-98273769	GM12891	blood:	n/a
11	chr10:98273719-98273769	HPAEpiC	pulmonary alveolar:	n/a
12	chr10:98273719-98273769	NH-A	brain:	n/a
13	chr10:98273714-98273764	HRPEpiC	eye:	n/a
14	chr10:98273714-98273764	IMR90	lung:	fetal
15	chr10:98273719-98273769	ECC-1	luminal epithelium:	n/a
16	chr10:98273719-98273769	GM06990	blood:	n/a
17	chr10:98273719-98273769	ovcar-3	ovarian:	n/a
18	chr10:98273719-98273769	HCPEpiC	choroid plexus:	n/a
19	chr10:98273719-98273769	GM12878	blood:	n/a
20	chr10:98273719-98273769	HepG2	liver:	n/a
21	chr10:98273719-98273769	MCF10A-Er-Src	breast:	n/a
22	chr10:98273719-98273769	AG10803	skin:	n/a
23	chr10:98273719-98273769	U87	brain:	n/a
24	chr10:98273719-98273769	T-47D	breast:	n/a
25	chr10:98273714-98273764	HMEC	breast:	n/a
26	chr10:98273719-98273769	GM19239	blood:	n/a
27	chr10:98273714-98273764	Caco-2	colon:	n/a
28	chr10:98273719-98273769	HIPEpiC	eye:	n/a
29	chr10:98273714-98273764	AG04449	skin:	fetal
30	chr10:98273714-98273764	H1-hESC	embryonic stem cell:	embryo
31	chr10:98273714-98273764	GM19239	blood:	n/a
32	chr10:98273719-98273769	HL-60	blood:	n/a
33	chr10:98273714-98273764	NHBE	bronchial:	n/a
34	chr10:98273714-98273764	HCPEpiC	choroid plexus:	n/a
35	chr10:98273714-98273764	HEK293	kidney:	embryo
36	chr10:98273714-98273764	T-47D	breast:	n/a
37	chr10:98273719-98273769	ProgFib	skin:	n/a
38	chr10:98273714-98273764	HRCEpiC	kidney:	n/a
39	chr10:98273714-98273764	NT2-D1	testis:	n/a
40	chr10:98273719-98273769	HMEC	breast:	n/a
41	chr10:98273714-98273764	AG04450	lung:	fetal
42	chr10:98273714-98273764	GM12891	blood:	n/a
43	chr10:98273719-98273769	A549	lung:	n/a
44	chr10:98273714-98273764	HEEpiC	esophagus:	n/a
45	chr10:98273719-98273769	HCM	heart:	n/a
46	chr10:98273714-98273764	RPTEC	kidney:	n/a
47	chr10:98273714-98273764	HAEpiC	amniotic membrane:	n/a
48	chr10:98273714-98273764	NH-A	brain:	n/a
49	chr10:98273719-98273769	AG09309	skin:	n/a
50	chr10:98273714-98273764	HRE	kidney:	n/a

No.	Distal block	Cell Line	Cell type
1	chr10:98134782..98135378-chr10:98273508..98274074,2	MCF-7	breast:
2	chr10:98272672..98275170-chr10:98590720..98593680,2	MCF-7	breast:
3	chr10:98133716..98135403-chr10:98271764..98273764,2	K562	blood:

Variant related genes	Relation type
TLL2	TF binding region
TLL2	CpG island
ENSG00000196233	Chromatin interaction
ENSG00000095587	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10786298	1.00[AMR][1000 genomes]
rs10882814	1.00[AMR][1000 genomes]
rs10882824	1.00[AMR][1000 genomes]
rs11188819	1.00[AMR][1000 genomes]
rs11188836	1.00[AMR][1000 genomes]
rs1156488	1.00[AMR][1000 genomes]
rs11818167	1.00[AMR][1000 genomes]
rs12252547	1.00[AMR][1000 genomes]
rs12268870	1.00[AMR][1000 genomes]
rs1408366	1.00[AMR][1000 genomes]
rs2181842	1.00[AMR][1000 genomes]
rs4495834	1.00[AMR][1000 genomes]
rs4917738	1.00[AMR][1000 genomes]
rs4917741	1.00[AMR][1000 genomes]
rs4919035	1.00[AMR][1000 genomes]
rs4919047	1.00[AMR][1000 genomes]
rs4919049	1.00[AMR][1000 genomes]
rs4919050	1.00[AMR][1000 genomes]
rs57603639	1.00[AMR][1000 genomes]
rs6584087	1.00[AMR][1000 genomes]
rs684211	1.00[AMR][1000 genomes]
rs7068211	1.00[AMR][1000 genomes]
rs7070088	1.00[AMR][1000 genomes]
rs7089654	1.00[AMR][1000 genomes]
rs7094142	1.00[AMR][1000 genomes]
rs7099800	1.00[AMR][1000 genomes]
rs74151329	1.00[AMR][1000 genomes]
rs7894537	1.00[AMR][1000 genomes]
rs7894814	1.00[AMR][1000 genomes]
rs7895501	1.00[AMR][1000 genomes]
rs7895746	1.00[AMR][1000 genomes]
rs7903410	1.00[AMR][1000 genomes]
rs7915905	1.00[AMR][1000 genomes]
rs7918128	1.00[AMR][1000 genomes]
rs912481	1.00[AMR][1000 genomes]
rs912483	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98272000-98274000	Bivalent Enhancer	Fetal Brain Male	brain
2	chr10:98272000-98274400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
3	chr10:98272200-98274000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr10:98272200-98274000	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr10:98272200-98274000	Active TSS	Right Ventricle	heart
6	chr10:98272200-98274000	Flanking Bivalent TSS/Enh	Thymus	Thymus
7	chr10:98272200-98274200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells short term culture	blood
8	chr10:98272200-98274200	Flanking Bivalent TSS/Enh	Primary T helper cells fromperipheralblood	blood
9	chr10:98272200-98274200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr10:98272200-98274200	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
11	chr10:98272200-98274400	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
12	chr10:98272200-98274400	Flanking Bivalent TSS/Enh	Primary T regulatory cells fromperipheralblood	blood
13	chr10:98272200-98274400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr10:98272400-98273800	Active TSS	Colon Smooth Muscle	Colon
15	chr10:98272400-98273800	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
16	chr10:98272400-98273800	Active TSS	HSMMtube	muscle
17	chr10:98272400-98274000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr10:98272400-98274000	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr10:98272400-98274000	Active TSS	Aorta	Aorta
20	chr10:98272400-98274000	Active TSS	Pancreatic Islets	Pancreatic Islet
21	chr10:98272400-98274000	Flanking Bivalent TSS/Enh	Fetal Thymus	thymus
22	chr10:98272400-98274200	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
23	chr10:98272400-98274200	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr10:98272400-98274200	Flanking Active TSS	Pancreas	Pancrea
25	chr10:98272400-98274200	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
26	chr10:98272400-98274400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr10:98272600-98273800	Active TSS	Breast Myoepithelial Primary Cells	Breast
28	chr10:98272600-98273800	Flanking Active TSS	Primary B cells from cord blood	blood
29	chr10:98272600-98273800	Active TSS	Brain Anterior Caudate	brain
30	chr10:98272600-98273800	Active TSS	Brain Substantia Nigra	brain
31	chr10:98272600-98273800	Active TSS	Left Ventricle	heart
32	chr10:98272600-98274000	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr10:98272600-98274000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr10:98272600-98274000	Active TSS	Brain Cingulate Gyrus	brain
35	chr10:98272600-98274000	Active TSS	Ovary	ovary
36	chr10:98272600-98274000	Flanking Active TSS	HMEC	breast
37	chr10:98272600-98274200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
38	chr10:98272600-98274200	Flanking Active TSS	Adipose Nuclei	Adipose
39	chr10:98272600-98274200	Active TSS	Brain Angular Gyrus	brain
40	chr10:98272600-98274400	Active TSS	H9 Cell Line	embryonic stem cell
41	chr10:98272600-98274400	Active TSS	Brain Inferior Temporal Lobe	brain
42	chr10:98272800-98273800	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
43	chr10:98272800-98273800	Active TSS	Primary T helper naive cells fromperipheralblood	blood
44	chr10:98272800-98273800	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
45	chr10:98272800-98273800	Bivalent/Poised TSS	Fetal Intestine Large	intestine
46	chr10:98272800-98274000	Active TSS	NHDF-Ad	bronchial
47	chr10:98272800-98274200	Active TSS	Brain Hippocampus Middle	brain
48	chr10:98272800-98274400	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
49	chr10:98272800-98274400	Flanking Bivalent TSS/Enh	Dnd41	blood
50	chr10:98273000-98273800	Transcr. at gene 5' and 3'	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links