Variant report

Variant	rs11818167
Chromosome Location	chr10:98180102-98180103
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10786298	1.00[AMR][1000 genomes]
rs10882766	1.00[AMR][1000 genomes]
rs10882814	1.00[AMR][1000 genomes]
rs10882824	1.00[AMR][1000 genomes]
rs11188819	1.00[AMR][1000 genomes]
rs11188836	1.00[AMR][1000 genomes]
rs1156488	1.00[AMR][1000 genomes]
rs12252547	1.00[AMR][1000 genomes]
rs12258827	1.00[AMR][1000 genomes]
rs12262820	1.00[AMR][1000 genomes]
rs12268870	1.00[AMR][1000 genomes]
rs1408365	1.00[AMR][1000 genomes]
rs1408366	1.00[AMR][1000 genomes]
rs2181842	1.00[AMR][1000 genomes]
rs4495834	1.00[AMR][1000 genomes]
rs4917738	1.00[AMR][1000 genomes]
rs4917741	1.00[AMR][1000 genomes]
rs4919035	1.00[AMR][1000 genomes]
rs57603639	1.00[AMR][1000 genomes]
rs6584087	1.00[AMR][1000 genomes]
rs7068211	1.00[AMR][1000 genomes]
rs7070088	1.00[AMR][1000 genomes]
rs7089654	1.00[AMR][1000 genomes]
rs7094142	1.00[AMR][1000 genomes]
rs74151329	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74151337	0.96[AFR][1000 genomes]
rs7894537	1.00[AMR][1000 genomes]
rs7894814	1.00[AMR][1000 genomes]
rs7895501	1.00[AMR][1000 genomes]
rs7895746	1.00[AMR][1000 genomes]
rs7903410	1.00[AMR][1000 genomes]
rs7915905	1.00[AMR][1000 genomes]
rs7918128	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv831950	chr10:98080972-98245434	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1047657	chr10:98123234-98183487	Weak transcription Active TSS Genic enhancers Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98171600-98182200	Weak transcription	Spleen	Spleen
2	chr10:98174400-98182000	Weak transcription	Right Ventricle	heart
3	chr10:98174800-98180200	Weak transcription	Left Ventricle	heart
4	chr10:98176000-98182000	Weak transcription	GM12878-XiMat	blood
5	chr10:98176400-98190000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr10:98176600-98182000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr10:98176800-98180600	Weak transcription	Ovary	ovary
8	chr10:98176800-98182000	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr10:98176800-98182200	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr10:98177000-98182000	Weak transcription	Right Atrium	heart
11	chr10:98177400-98182000	Weak transcription	Adipose Nuclei	Adipose
12	chr10:98177600-98181600	Weak transcription	Fetal Lung	lung
13	chr10:98177800-98182000	Weak transcription	Placenta	Placenta
14	chr10:98178000-98181800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr10:98178200-98182000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr10:98180000-98181200	Enhancers	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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