Variant report

Variant	rs4917741
Chromosome Location	chr10:98340301-98340302
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SETDB1	chr10:98339698-98340519	U2OS	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:98326952..98329299-chr10:98339860..98342406,2	K562	blood:
2	chr10:98340228..98344806-chr10:98344870..98348374,6	MCF-7	breast:

Variant related genes	Relation type
TM9SF3	TF binding region
ENSG00000077147	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10786298	1.00[AMR][1000 genomes]
rs10882814	1.00[AMR][1000 genomes]
rs10882824	1.00[AMR][1000 genomes]
rs11188819	1.00[AMR][1000 genomes]
rs11188836	1.00[AMR][1000 genomes]
rs1156488	1.00[AMR][1000 genomes]
rs11818167	1.00[AMR][1000 genomes]
rs1408365	1.00[AMR][1000 genomes]
rs1408366	1.00[AMR][1000 genomes]
rs2181842	1.00[AMR][1000 genomes]
rs4495834	1.00[AMR][1000 genomes]
rs4917738	1.00[AMR][1000 genomes]
rs4919035	1.00[AMR][1000 genomes]
rs4919047	1.00[AMR][1000 genomes]
rs4919049	1.00[AMR][1000 genomes]
rs4919050	1.00[AMR][1000 genomes]
rs57603639	1.00[AMR][1000 genomes]
rs6584087	1.00[AMR][1000 genomes]
rs684211	1.00[AMR][1000 genomes]
rs7068211	1.00[AMR][1000 genomes]
rs7070088	1.00[AMR][1000 genomes]
rs7089654	1.00[AMR][1000 genomes]
rs7094142	1.00[AMR][1000 genomes]
rs7099800	1.00[AMR][1000 genomes]
rs74151329	1.00[AMR][1000 genomes]
rs7894537	1.00[AMR][1000 genomes]
rs7894814	1.00[AMR][1000 genomes]
rs7895501	1.00[AMR][1000 genomes]
rs7895746	1.00[AMR][1000 genomes]
rs7903410	1.00[AMR][1000 genomes]
rs7915905	1.00[AMR][1000 genomes]
rs7918128	1.00[AMR][1000 genomes]
rs912481	1.00[AMR][1000 genomes]
rs912483	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98276400-98343200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr10:98286600-98345600	Weak transcription	Esophagus	oesophagus
3	chr10:98290000-98344200	Weak transcription	Spleen	Spleen
4	chr10:98292600-98344800	Weak transcription	Brain Germinal Matrix	brain
5	chr10:98307800-98341600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr10:98314400-98345600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr10:98320200-98344800	Weak transcription	HSMMtube	muscle
8	chr10:98320400-98341600	Weak transcription	Brain Cingulate Gyrus	brain
9	chr10:98322200-98343400	Weak transcription	Primary neutrophils fromperipheralblood	blood
10	chr10:98324600-98345000	Weak transcription	Fetal Kidney	kidney
11	chr10:98326600-98341600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr10:98328000-98343200	Weak transcription	Stomach Smooth Muscle	stomach
13	chr10:98328200-98341400	Weak transcription	NHDF-Ad	bronchial
14	chr10:98329200-98345000	Weak transcription	Fetal Stomach	stomach
15	chr10:98329200-98345600	Weak transcription	Gastric	stomach
16	chr10:98329800-98344400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr10:98329800-98345200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr10:98331400-98344200	Weak transcription	Fetal Muscle Leg	muscle
19	chr10:98331400-98344800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr10:98331600-98341600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr10:98331800-98345200	Weak transcription	Fetal Brain Male	brain
22	chr10:98332200-98341600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr10:98332200-98341600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr10:98332200-98341600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr10:98332200-98345400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr10:98333400-98344000	Weak transcription	Primary B cells from cord blood	blood
27	chr10:98334800-98345600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr10:98335000-98341600	Weak transcription	Fetal Thymus	thymus
29	chr10:98335200-98340800	Weak transcription	Fetal Lung	lung
30	chr10:98335400-98341400	Weak transcription	HUVEC	blood vessel
31	chr10:98335800-98344400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr10:98336000-98343600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr10:98336200-98342600	Enhancers	Fetal Intestine Large	intestine
34	chr10:98336200-98345200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
35	chr10:98336400-98341400	Enhancers	Duodenum Mucosa	Duodenum
36	chr10:98336400-98341600	Enhancers	Rectal Mucosa Donor 31	rectum
37	chr10:98336400-98342600	Weak transcription	Primary monocytes fromperipheralblood	blood
38	chr10:98336400-98343800	Weak transcription	NHEK	skin
39	chr10:98336400-98345200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
40	chr10:98336400-98345600	Weak transcription	Fetal Muscle Trunk	muscle
41	chr10:98336600-98341400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
42	chr10:98336600-98341600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
43	chr10:98336600-98341600	Weak transcription	Hela-S3	cervix
44	chr10:98336600-98343800	Enhancers	Primary T cells from cord blood	blood
45	chr10:98336600-98344800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr10:98336600-98345000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr10:98336800-98341400	Weak transcription	Osteobl	bone
48	chr10:98336800-98345000	Enhancers	Primary T helper cells fromperipheralblood	blood
49	chr10:98336800-98345200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
50	chr10:98337000-98341600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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