Variant report

Variant	rs7099800
Chromosome Location	chr10:98402174-98402175
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:98400306..98402227-chr10:98590787..98593590,2	K562	blood:
2	chr10:98402172..98402991-chr10:98785083..98785627,3	K562	blood:
3	chr10:98346727..98348921-chr10:98400079..98402229,2	MCF-7	breast:
4	chr10:98402065..98404852-chr10:98590571..98592744,2	MCF-7	breast:
5	chr10:98397605..98402799-chr10:98589060..98594055,9	MCF-7	breast:

Variant related genes	Relation type
ENSG00000196233	Chromatin interaction
ENSG00000077147	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10786298	1.00[AMR][1000 genomes]
rs10882814	1.00[AMR][1000 genomes]
rs10882824	1.00[AMR][1000 genomes]
rs10882838	1.00[EUR][1000 genomes]
rs11188819	1.00[AMR][1000 genomes]
rs11188836	1.00[AMR][1000 genomes]
rs1156488	1.00[AMR][1000 genomes]
rs1408365	1.00[AMR][1000 genomes]
rs1408366	1.00[AMR][1000 genomes]
rs2181842	1.00[AMR][1000 genomes]
rs4495834	1.00[AMR][1000 genomes]
rs4917738	1.00[AMR][1000 genomes]
rs4917741	1.00[AMR][1000 genomes]
rs4919035	1.00[AMR][1000 genomes]
rs4919047	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4919049	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4919050	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6584087	1.00[AMR][1000 genomes]
rs684211	1.00[AMR][1000 genomes]
rs7068211	1.00[AMR][1000 genomes]
rs7070088	1.00[AMR][1000 genomes]
rs7089654	1.00[AMR][1000 genomes]
rs7094142	1.00[AMR][1000 genomes]
rs7894537	1.00[AMR][1000 genomes]
rs7894814	1.00[AMR][1000 genomes]
rs7895501	1.00[AMR][1000 genomes]
rs7895746	1.00[AMR][1000 genomes]
rs7903410	1.00[AMR][1000 genomes]
rs7915905	1.00[AMR][1000 genomes]
rs7918128	1.00[AMR][1000 genomes]
rs912481	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs912483	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv532232	chr10:98360775-99141797	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
3	nsv7502	chr10:98384703-98429505	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv895910	chr10:98386483-98640994	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98352600-98403000	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr10:98353000-98403000	Strong transcription	Primary monocytes fromperipheralblood	blood
3	chr10:98367400-98418600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr10:98381600-98408200	Weak transcription	Lung	lung
5	chr10:98387000-98410200	Weak transcription	Gastric	stomach
6	chr10:98393000-98408000	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr10:98394400-98402400	Weak transcription	Placenta	Placenta
8	chr10:98396200-98404400	Strong transcription	Primary B cells from cord blood	blood
9	chr10:98396400-98407800	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr10:98397600-98408200	Weak transcription	Duodenum Mucosa	Duodenum
11	chr10:98398400-98410400	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr10:98399400-98403400	Genic enhancers	Primary B cells from peripheral blood	blood
13	chr10:98399800-98418200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr10:98400200-98403200	Weak transcription	Spleen	Spleen
15	chr10:98400600-98403200	Enhancers	Liver	Liver
16	chr10:98400800-98402600	Enhancers	Pancreas	Pancrea
17	chr10:98400800-98407000	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr10:98401200-98402600	Enhancers	Ovary	ovary
19	chr10:98401200-98403200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr10:98401200-98405200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
21	chr10:98401200-98406000	Weak transcription	Fetal Intestine Large	intestine
22	chr10:98401200-98406200	Weak transcription	Fetal Intestine Small	intestine
23	chr10:98401200-98407600	Weak transcription	HepG2	liver
24	chr10:98401200-98411000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
25	chr10:98401400-98402800	Strong transcription	Primary neutrophils fromperipheralblood	blood
26	chr10:98401400-98403400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr10:98401400-98404200	Strong transcription	GM12878-XiMat	blood
28	chr10:98401400-98405000	Weak transcription	Primary hematopoietic stem cells	blood
29	chr10:98401400-98406800	Weak transcription	HSMMtube	muscle
30	chr10:98401600-98402200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
31	chr10:98401600-98402600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr10:98401800-98402400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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