Variant report

Variant	rs10882838
Chromosome Location	chr10:98403745-98403746
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:98402065..98404852-chr10:98590571..98592744,2	MCF-7	breast:
2	chr10:98402472..98403864-chr10:98503459..98504827,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000196233	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs4919047	1.00[EUR][1000 genomes]
rs4919049	1.00[EUR][1000 genomes]
rs4919050	1.00[EUR][1000 genomes]
rs7099800	1.00[EUR][1000 genomes]
rs912481	1.00[EUR][1000 genomes]
rs912483	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv532232	chr10:98360775-99141797	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
3	nsv7502	chr10:98384703-98429505	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv895910	chr10:98386483-98640994	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98367400-98418600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr10:98381600-98408200	Weak transcription	Lung	lung
3	chr10:98387000-98410200	Weak transcription	Gastric	stomach
4	chr10:98393000-98408000	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr10:98396200-98404400	Strong transcription	Primary B cells from cord blood	blood
6	chr10:98396400-98407800	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr10:98397600-98408200	Weak transcription	Duodenum Mucosa	Duodenum
8	chr10:98398400-98410400	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr10:98399800-98418200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr10:98400800-98407000	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr10:98401200-98405200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
12	chr10:98401200-98406000	Weak transcription	Fetal Intestine Large	intestine
13	chr10:98401200-98406200	Weak transcription	Fetal Intestine Small	intestine
14	chr10:98401200-98407600	Weak transcription	HepG2	liver
15	chr10:98401200-98411000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr10:98401400-98404200	Strong transcription	GM12878-XiMat	blood
17	chr10:98401400-98405000	Weak transcription	Primary hematopoietic stem cells	blood
18	chr10:98401400-98406800	Weak transcription	HSMMtube	muscle
19	chr10:98402600-98405000	Weak transcription	Pancreas	Pancrea
20	chr10:98402600-98408000	Weak transcription	Ovary	ovary
21	chr10:98402800-98405200	Genic enhancers	Primary neutrophils fromperipheralblood	blood
22	chr10:98403000-98406600	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr10:98403200-98403800	Strong transcription	Spleen	Spleen
24	chr10:98403200-98404000	Genic enhancers	Liver	Liver
25	chr10:98403200-98406200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr10:98403200-98410000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr10:98403400-98404600	Strong transcription	Primary monocytes fromperipheralblood	blood
28	chr10:98403400-98404600	Strong transcription	Primary B cells from peripheral blood	blood
29	chr10:98403400-98404600	Strong transcription	Monocytes-CD14+_RO01746	blood
30	chr10:98403400-98404800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr10:98403400-98410000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr10:98403600-98404600	Weak transcription	Placenta	Placenta

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