Variant report

Variant	rs10882824
Chromosome Location	chr10:98357888-98357889
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:98352916..98354492-chr10:98357583..98359914,2	K562	blood:
2	chr10:98345273..98348471-chr10:98351958..98358343,11	MCF-7	breast:
3	chr10:98357043..98359893-chr10:98362984..98364964,2	K562	blood:
4	chr10:98349885..98352079-chr10:98354867..98358726,5	MCF-7	breast:
5	chr10:98354342..98356014-chr10:98357344..98358952,2	MCF-7	breast:
6	chr10:98345226..98348138-chr10:98356435..98359434,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000077147	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10786298	1.00[AMR][1000 genomes]
rs10882814	1.00[AMR][1000 genomes]
rs11188819	1.00[AMR][1000 genomes]
rs11188836	1.00[AMR][1000 genomes]
rs1156488	1.00[AMR][1000 genomes]
rs11818167	1.00[AMR][1000 genomes]
rs1408365	1.00[AMR][1000 genomes]
rs1408366	1.00[AMR][1000 genomes]
rs2181842	1.00[AMR][1000 genomes]
rs4495834	1.00[AMR][1000 genomes]
rs4917738	1.00[AMR][1000 genomes]
rs4917741	1.00[AMR][1000 genomes]
rs4919035	1.00[AMR][1000 genomes]
rs4919047	1.00[AMR][1000 genomes]
rs4919049	1.00[AMR][1000 genomes]
rs4919050	1.00[AMR][1000 genomes]
rs57603639	1.00[AMR][1000 genomes]
rs6584087	1.00[AMR][1000 genomes]
rs684211	1.00[AMR][1000 genomes]
rs7068211	1.00[AMR][1000 genomes]
rs7070088	1.00[AMR][1000 genomes]
rs7089654	1.00[AMR][1000 genomes]
rs7094142	1.00[AMR][1000 genomes]
rs7099800	1.00[AMR][1000 genomes]
rs74151329	1.00[AMR][1000 genomes]
rs7894537	1.00[AMR][1000 genomes]
rs7894814	1.00[AMR][1000 genomes]
rs7895501	1.00[AMR][1000 genomes]
rs7895746	1.00[AMR][1000 genomes]
rs7903410	1.00[AMR][1000 genomes]
rs7915905	1.00[AMR][1000 genomes]
rs7918128	1.00[AMR][1000 genomes]
rs912481	1.00[AMR][1000 genomes]
rs912483	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv895909	chr10:98354924-98382165	Weak transcription Bivalent Enhancer Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98347400-98358800	Weak transcription	Pancreas	Pancrea
2	chr10:98347800-98365800	Weak transcription	Ovary	ovary
3	chr10:98348000-98373600	Weak transcription	Left Ventricle	heart
4	chr10:98348200-98359000	Weak transcription	Brain Substantia Nigra	brain
5	chr10:98349800-98366400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr10:98349800-98367800	Weak transcription	Small Intestine	intestine
7	chr10:98350800-98395600	Strong transcription	Primary neutrophils fromperipheralblood	blood
8	chr10:98351600-98363400	Weak transcription	Brain Hippocampus Middle	brain
9	chr10:98352400-98378600	Strong transcription	Liver	Liver
10	chr10:98352400-98399400	Strong transcription	Primary B cells from peripheral blood	blood
11	chr10:98352600-98369400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr10:98352600-98403000	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr10:98353000-98388400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr10:98353000-98403000	Strong transcription	Primary monocytes fromperipheralblood	blood
15	chr10:98353600-98362800	Strong transcription	Primary hematopoietic stem cells	blood
16	chr10:98354200-98360800	Enhancers	Fetal Intestine Large	intestine
17	chr10:98354600-98360800	Strong transcription	Primary B cells from cord blood	blood
18	chr10:98354600-98388600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr10:98354800-98370600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
20	chr10:98355200-98360800	Enhancers	Stomach Mucosa	stomach
21	chr10:98356000-98358000	Weak transcription	Gastric	stomach
22	chr10:98356200-98358600	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr10:98356200-98362400	Weak transcription	Lung	lung
24	chr10:98356200-98367200	Weak transcription	Colonic Mucosa	Colon
25	chr10:98356400-98358400	Weak transcription	Duodenum Mucosa	Duodenum
26	chr10:98356800-98358200	Weak transcription	HSMMtube	muscle
27	chr10:98357000-98358000	Weak transcription	Fetal Intestine Small	intestine
28	chr10:98357400-98358400	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr10:98357400-98358400	Weak transcription	Spleen	Spleen
30	chr10:98357400-98358600	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr10:98357400-98364600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr10:98357600-98359000	Enhancers	Placenta	Placenta
33	chr10:98357600-98369200	Weak transcription	HepG2	liver
34	chr10:98357800-98382000	Strong transcription	GM12878-XiMat	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links