Variant report

Variant	rs12252547
Chromosome Location	chr10:98069234-98069235
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:98067037..98069492-chr10:98071586..98073914,2	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10882766	1.00[AMR][1000 genomes]
rs11813386	1.00[EUR][1000 genomes]
rs11818167	1.00[AMR][1000 genomes]
rs12258827	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12260997	1.00[EUR][1000 genomes]
rs12261067	1.00[EUR][1000 genomes]
rs12262820	1.00[AMR][1000 genomes]
rs12268870	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1408365	1.00[AMR][1000 genomes]
rs4495834	1.00[AMR][1000 genomes]
rs4917738	1.00[AMR][1000 genomes]
rs56746031	1.00[EUR][1000 genomes]
rs57155025	1.00[EUR][1000 genomes]
rs57603639	1.00[AMR][1000 genomes]
rs58744084	1.00[EUR][1000 genomes]
rs60349635	1.00[EUR][1000 genomes]
rs74151329	1.00[AMR][1000 genomes]
rs74153617	1.00[EUR][1000 genomes]
rs74153623	1.00[EUR][1000 genomes]
rs7894537	1.00[AMR][1000 genomes]
rs7896411	1.00[EUR][1000 genomes]
rs7903410	1.00[AMR][1000 genomes]
rs7915905	1.00[AMR][1000 genomes]
rs7916154	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	esv2761620	chr10:98047045-98089749	Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98064200-98069400	Active TSS	Thymus	Thymus
2	chr10:98066400-98070000	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr10:98066400-98072400	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr10:98066400-98072600	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr10:98066600-98071400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr10:98066800-98071000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr10:98066800-98072000	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr10:98067000-98072400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr10:98067200-98070400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr10:98067200-98076600	Enhancers	Fetal Thymus	thymus
11	chr10:98067400-98070400	Enhancers	H9 Cell Line	embryonic stem cell
12	chr10:98067600-98072400	Enhancers	H1 Cell Line	embryonic stem cell
13	chr10:98067800-98071000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr10:98067800-98071200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr10:98068000-98070400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr10:98068000-98070600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr10:98068400-98070400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr10:98068600-98071200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr10:98068800-98070000	Enhancers	Fetal Lung	lung
20	chr10:98068800-98070000	Enhancers	Right Atrium	heart
21	chr10:98068800-98070200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr10:98068800-98070400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr10:98068800-98070400	Enhancers	Fetal Stomach	stomach
24	chr10:98068800-98070400	Enhancers	Rectal Smooth Muscle	rectum
25	chr10:98068800-98070600	Enhancers	Colon Smooth Muscle	Colon
26	chr10:98068800-98070600	Enhancers	Stomach Smooth Muscle	stomach
27	chr10:98068800-98071200	Enhancers	Rectal Mucosa Donor 31	rectum
28	chr10:98069000-98069400	Enhancers	iPS-20b Cell Line	embryonic stem cell
29	chr10:98069000-98069600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
30	chr10:98069000-98069600	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
31	chr10:98069000-98070400	Enhancers	Sigmoid Colon	Sigmoid Colon
32	chr10:98069200-98069600	Flanking Active TSS	Dnd41	blood
33	chr10:98069200-98070200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
34	chr10:98069200-98070200	Weak transcription	Fetal Kidney	kidney
35	chr10:98069200-98070400	Enhancers	Duodenum Smooth Muscle	Duodenum

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