Variant report

Variant	rs7916154
Chromosome Location	chr10:98031160-98031161
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:131)
CpG islands
(count:61)
Chromatin interactive
region (count:1)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:131 , 50 per page) page: 1 2 3

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:98031146-98031346	MCF-7	breast:	n/a	n/a
2	ELK1	chr10:98030927-98031678	GM12878	blood:	n/a	n/a
3	STAT5A	chr10:98031026-98031631	GM12878	blood:	n/a	n/a
4	RCOR1	chr10:98031055-98032131	GM12878	blood:	n/a	n/a
5	MAX	chr10:98031065-98031649	MCF-7	breast:	n/a	chr10:98031368-98031381
6	PML	chr10:98030747-98031823	GM12878	blood:	n/a	chr10:98030752-98030760
7	RELA	chr10:98030514-98033511	GM18505	blood:	n/a	n/a
8	BCLAF1	chr10:98030738-98031847	GM12878	blood:	n/a	n/a
9	STAT3	chr10:98030796-98031911	GM12878	blood:	n/a	n/a
10	POLR2A	chr10:98031003-98031685	GM12891	blood:	n/a	n/a
11	BCLAF1	chr10:98030925-98031735	GM12878	blood:	n/a	n/a
12	NFYB	chr10:98030948-98031646	GM12878	blood:	n/a	n/a
13	POLR2A	chr10:98030929-98031662	GM12891	blood:	n/a	n/a
14	GATA3	chr10:98031102-98031711	MCF-7	breast:	n/a	n/a
15	MYC	chr10:98031034-98031573	MCF10A-Er-Src	breast:	n/a	chr10:98031368-98031381
16	IKZF1	chr10:98030874-98033590	GM12878	blood:	n/a	n/a
17	POLR2A	chr10:98030661-98033581	GM12878	blood:	n/a	n/a
18	CHD1	chr10:98029337-98033574	GM12878	blood:	n/a	n/a
19	EP300	chr10:98031025-98031721	GM12878	blood:	n/a	chr10:98031524-98031533
20	NFIC	chr10:98030592-98031844	GM12878	blood:	n/a	n/a
21	GATA3	chr10:98031053-98031776	T-47D	breast:	n/a	n/a
22	POLR2A	chr10:98031050-98031602	GM12891	blood:	n/a	n/a
23	CHD2	chr10:98030962-98031632	GM12878	blood:	n/a	n/a
24	POLR2A	chr10:98030462-98033576	GM12878	blood:	n/a	n/a
25	POLR2A	chr10:98030748-98033613	GM12878	blood:	n/a	n/a
26	SPI1	chr10:98030642-98031268	HL-60	blood:	n/a	n/a
27	RELA	chr10:98030933-98032057	GM15510	blood:	n/a	n/a
28	MYC	chr10:98031077-98031569	MCF10A-Er-Src	breast:	n/a	chr10:98031368-98031381
29	POLR2A	chr10:98030482-98033560	GM18505	blood:	n/a	n/a
30	EBF1	chr10:98031090-98031597	GM12878	blood:	n/a	n/a
31	POLR2A	chr10:98031063-98031692	ECC-1	luminal epithelium:	n/a	n/a
32	POLR2A	chr10:98030877-98031648	GM12892	blood:	n/a	n/a
33	POLR2A	chr10:98030943-98031713	GM12892	blood:	n/a	n/a
34	POU2F2	chr10:98030978-98031803	GM12878	blood:	n/a	chr10:98031653-98031661 chr10:98031652-98031661 chr10:98031649-98031664 chr10:98031653-98031660 chr10:98031652-98031663 chr10:98031650-98031664 chr10:98031652-98031662 chr10:98031650-98031662 chr10:98031651-98031661 chr10:98031646-98031668 chr10:98031651-98031661 chr10:98031648-98031666
35	ZNF384	chr10:98031117-98031597	GM12878	blood:	n/a	n/a
36	POLR2A	chr10:98030974-98031587	GM12892	blood:	n/a	n/a
37	POLR2A	chr10:98030975-98033546	GM12892	blood:	n/a	n/a
38	POU2F2	chr10:98031053-98031614	GM12891	blood:	n/a	n/a
39	RELA	chr10:98030543-98033525	GM10847	blood:	n/a	n/a
40	MAX	chr10:98031127-98031536	MCF-7	breast:	n/a	chr10:98031368-98031381
41	MEF2A	chr10:98031149-98031705	GM12878	blood:	n/a	chr10:98031677-98031698 chr10:98031677-98031698
42	POLR2A	chr10:98030958-98031687	GM15510	blood:	n/a	n/a
43	TBP	chr10:98030630-98032213	GM12878	blood:	n/a	n/a
44	RUNX3	chr10:98031010-98031723	GM12878	blood:	n/a	n/a
45	YY1	chr10:98031114-98031452	GM12878	blood:	n/a	n/a
46	NFATC1	chr10:98030790-98031589	GM12878	blood:	n/a	n/a
47	POLR2A	chr10:98030877-98031686	GM12892	blood:	n/a	n/a
48	RELA	chr10:98030912-98032206	GM18951	blood:	n/a	n/a
49	POLR2A	chr10:98031049-98031520	MCF-7	breast:	n/a	n/a
50	STAT3	chr10:98031109-98031824	MCF10A-Er-Src	breast:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr10:98031125-98031175	NHDF-neo	bronchial:	n/a
2	chr10:98031125-98031175	AG04449	skin:	fetal
3	chr10:98031125-98031175	K562	blood:	n/a
4	chr10:98031125-98031175	HEK293	kidney:	embryo
5	chr10:98031125-98031175	NHBE	bronchial:	n/a
6	chr10:98031125-98031175	NB4	blood:	n/a
7	chr10:98031125-98031175	HCPEpiC	choroid plexus:	n/a
8	chr10:98031125-98031175	HRPEpiC	eye:	n/a
9	chr10:98031125-98031175	SAEC	small airway:	n/a
10	chr10:98031125-98031175	HMEC	breast:	n/a
11	chr10:98031125-98031175	HNPCEpiC	eye:	n/a
12	chr10:98031125-98031175	IMR90	lung:	fetal
13	chr10:98031125-98031175	AG10803	skin:	n/a
14	chr10:98031125-98031175	PrEC	prostate:	n/a
15	chr10:98031125-98031175	SKMC	muscle:	n/a
16	chr10:98031125-98031175	Hela-S3	cervix:	n/a
17	chr10:98031125-98031175	MCF-7	breast:	n/a
18	chr10:98031125-98031175	HCT-116	colon:	n/a
19	chr10:98031125-98031175	CMK	blood:	n/a
20	chr10:98031125-98031175	T-47D	breast:	n/a
21	chr10:98031125-98031175	MCF10A-Er-Src	breast:	n/a
22	chr10:98031125-98031175	NH-A	brain:	n/a
23	chr10:98031125-98031175	Jurkat	blood:	n/a
24	chr10:98031125-98031175	AG04450	lung:	fetal
25	chr10:98031125-98031175	ovcar-3	ovarian:	n/a
26	chr10:98031125-98031175	BJ	skin:	n/a
27	chr10:98031125-98031175	HepG2	liver:	n/a
28	chr10:98031125-98031175	GM06990	blood:	n/a
29	chr10:98031125-98031175	GM19239	blood:	n/a
30	chr10:98031125-98031175	PFSK-1	brain:	n/a
31	chr10:98031125-98031175	ECC-1	luminal epithelium:	n/a
32	chr10:98031125-98031175	PANC-1	pancreas:	n/a
33	chr10:98031125-98031175	HCF	heart:	n/a
34	chr10:98031125-98031175	HIPEpiC	eye:	n/a
35	chr10:98031125-98031175	AoSMC	blood vessel:	n/a
36	chr10:98031125-98031175	BE2_C	brain:	n/a
37	chr10:98031125-98031175	GM12878	blood:	n/a
38	chr10:98031125-98031175	LNCaP	prostate:	n/a
39	chr10:98031125-98031175	AG09309	skin:	n/a
40	chr10:98031125-98031175	HRE	kidney:	n/a
41	chr10:98031125-98031175	HCM	heart:	n/a
42	chr10:98031125-98031175	RPTEC	kidney:	n/a
43	chr10:98031125-98031175	SK-N-SH	brain:	n/a
44	chr10:98031125-98031175	GM12892	blood:	n/a
45	chr10:98031125-98031175	A549	lung:	n/a
46	chr10:98031125-98031175	GM12891	blood:	n/a
47	chr10:98031125-98031175	HL-60	blood:	n/a
48	chr10:98031125-98031175	NT2-D1	testis:	n/a
49	chr10:98031125-98031175	Caco-2	colon:	n/a
50	chr10:98031125-98031175	HEEpiC	esophagus:	n/a

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97848840..97850347-chr10:98030578..98032838,2	MCF-7	breast:

No data

Variant related genes	Relation type
BLNK	TF binding region
BLNK	CpG island
ENSG00000226688	Chromatin interaction

rs_ID	r²[population]
rs11813386	1.00[EUR][1000 genomes]
rs12252547	1.00[EUR][1000 genomes]
rs12258827	1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs12260997	1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs12261067	1.00[EUR][1000 genomes]
rs12268870	1.00[EUR][1000 genomes]
rs56746031	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57155025	1.00[EUR][1000 genomes]
rs58744084	1.00[EUR][1000 genomes]
rs60349635	1.00[EUR][1000 genomes]
rs74153617	1.00[EUR][1000 genomes]
rs74153623	1.00[EUR][1000 genomes]
rs7896411	1.00[EUR][1000 genomes]

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98023600-98031800	Weak transcription	Small Intestine	intestine
2	chr10:98023800-98032000	Weak transcription	Spleen	Spleen
3	chr10:98026200-98033000	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr10:98027400-98031200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr10:98028200-98032000	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
6	chr10:98028200-98032200	Active TSS	Brain Hippocampus Middle	brain
7	chr10:98028400-98031600	Active TSS	Rectal Mucosa Donor 29	rectum
8	chr10:98028800-98031600	Active TSS	Fetal Kidney	kidney
9	chr10:98029200-98031200	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
10	chr10:98029200-98031400	Active TSS	Fetal Stomach	stomach
11	chr10:98029200-98031600	Active TSS	Fetal Intestine Large	intestine
12	chr10:98029400-98031400	Active TSS	Primary B cells from peripheral blood	blood
13	chr10:98029400-98031400	Active TSS	Liver	Liver
14	chr10:98029600-98031400	Active TSS	Stomach Mucosa	stomach
15	chr10:98029600-98032000	Weak transcription	Lung	lung
16	chr10:98029800-98031400	Active TSS	Fetal Intestine Small	intestine
17	chr10:98029800-98031800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
18	chr10:98029800-98032000	Active TSS	GM12878-XiMat	blood
19	chr10:98030000-98031400	Active TSS	Primary hematopoietic stem cells	blood
20	chr10:98030000-98031400	Active TSS	Esophagus	oesophagus
21	chr10:98030000-98031400	Active TSS	Pancreas	Pancrea
22	chr10:98030000-98031600	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr10:98030000-98032000	Weak transcription	Gastric	stomach
24	chr10:98030200-98031600	Active TSS	Duodenum Mucosa	Duodenum
25	chr10:98030200-98031800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
26	chr10:98030400-98031400	Active TSS	Pancreatic Islets	Pancreatic Islet
27	chr10:98030400-98031600	Flanking Active TSS	HMEC	breast
28	chr10:98030600-98031200	Active TSS	Brain Anterior Caudate	brain
29	chr10:98030600-98031400	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
30	chr10:98030600-98031400	Active TSS	Fetal Thymus	thymus
31	chr10:98030600-98031600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr10:98030800-98031200	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr10:98030800-98031200	Flanking Active TSS	Adipose Nuclei	Adipose
34	chr10:98030800-98031200	Enhancers	Aorta	Aorta
35	chr10:98030800-98031200	Flanking Active TSS	Placenta	Placenta
36	chr10:98030800-98031200	Active TSS	Sigmoid Colon	Sigmoid Colon
37	chr10:98030800-98031400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
38	chr10:98030800-98031400	Active TSS	Stomach Smooth Muscle	stomach
39	chr10:98031000-98031200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr10:98031000-98031200	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr10:98031000-98031200	Flanking Active TSS	Primary B cells from cord blood	blood
42	chr10:98031000-98031200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr10:98031000-98031200	Flanking Active TSS	Colonic Mucosa	Colon
44	chr10:98031000-98031200	Flanking Active TSS	Colon Smooth Muscle	Colon
45	chr10:98031000-98031200	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
46	chr10:98031000-98031200	Flanking Active TSS	Fetal Muscle Leg	muscle
47	chr10:98031000-98031200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
48	chr10:98031000-98031400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr10:98031000-98031400	Flanking Active TSS	Fetal Lung	lung
50	chr10:98031000-98031400	Flanking Active TSS	Rectal Smooth Muscle	rectum

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