Variant report

Variant	rs7896411
Chromosome Location	chr10:98031666-98031667
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ELK1	chr10:98030927-98031678	GM12878	blood:	n/a	n/a
2	RCOR1	chr10:98031055-98032131	GM12878	blood:	n/a	n/a
3	PML	chr10:98030747-98031823	GM12878	blood:	n/a	chr10:98030752-98030760
4	RELA	chr10:98030514-98033511	GM18505	blood:	n/a	n/a
5	BCLAF1	chr10:98030738-98031847	GM12878	blood:	n/a	n/a
6	STAT3	chr10:98030796-98031911	GM12878	blood:	n/a	n/a
7	POLR2A	chr10:98031003-98031685	GM12891	blood:	n/a	n/a
8	BCLAF1	chr10:98030925-98031735	GM12878	blood:	n/a	n/a
9	GATA3	chr10:98031102-98031711	MCF-7	breast:	n/a	n/a
10	IKZF1	chr10:98030874-98033590	GM12878	blood:	n/a	n/a
11	POLR2A	chr10:98030661-98033581	GM12878	blood:	n/a	n/a
12	CHD1	chr10:98029337-98033574	GM12878	blood:	n/a	n/a
13	EP300	chr10:98031025-98031721	GM12878	blood:	n/a	chr10:98031524-98031533
14	NFIC	chr10:98030592-98031844	GM12878	blood:	n/a	n/a
15	GATA3	chr10:98031053-98031776	T-47D	breast:	n/a	n/a
16	POLR2A	chr10:98030462-98033576	GM12878	blood:	n/a	n/a
17	POLR2A	chr10:98030748-98033613	GM12878	blood:	n/a	n/a
18	RELA	chr10:98030933-98032057	GM15510	blood:	n/a	n/a
19	POLR2A	chr10:98030482-98033560	GM18505	blood:	n/a	n/a
20	POLR2A	chr10:98031063-98031692	ECC-1	luminal epithelium:	n/a	n/a
21	POLR2A	chr10:98030943-98031713	GM12892	blood:	n/a	n/a
22	POU2F2	chr10:98030978-98031803	GM12878	blood:	n/a	chr10:98031653-98031661 chr10:98031652-98031661 chr10:98031649-98031664 chr10:98031653-98031660 chr10:98031652-98031663 chr10:98031650-98031664 chr10:98031652-98031662 chr10:98031650-98031662 chr10:98031651-98031661 chr10:98031646-98031668 chr10:98031651-98031661 chr10:98031648-98031666
23	POLR2A	chr10:98030975-98033546	GM12892	blood:	n/a	n/a
24	RELA	chr10:98030543-98033525	GM10847	blood:	n/a	n/a
25	MEF2A	chr10:98031149-98031705	GM12878	blood:	n/a	chr10:98031677-98031698 chr10:98031677-98031698
26	POLR2A	chr10:98030958-98031687	GM15510	blood:	n/a	n/a
27	TBP	chr10:98030630-98032213	GM12878	blood:	n/a	n/a
28	RUNX3	chr10:98031010-98031723	GM12878	blood:	n/a	n/a
29	POLR2A	chr10:98030877-98031686	GM12892	blood:	n/a	n/a
30	RELA	chr10:98030912-98032206	GM18951	blood:	n/a	n/a
31	STAT3	chr10:98031109-98031824	MCF10A-Er-Src	breast:	n/a	n/a
32	POLR2A	chr10:98030836-98033840	GM18951	blood:	n/a	n/a
33	FOXA1	chr10:98031121-98031668	T-47D	breast:	n/a	n/a
34	MAZ	chr10:98030740-98033512	GM12878	blood:	n/a	chr10:98031883-98031892 chr10:98031368-98031381
35	POLR2A	chr10:98031657-98033499	GM12892	blood:	n/a	n/a
36	POLR2A	chr10:98030880-98033488	GM18526	blood:	n/a	n/a
37	NFIC	chr10:98031046-98031754	GM12878	blood:	n/a	n/a
38	GATA3	chr10:98031054-98031809	T-47D	breast:	n/a	n/a
39	STAT5A	chr10:98030759-98032588	GM12878	blood:	n/a	chr10:98032188-98032200
40	ATF2	chr10:98030962-98031987	GM12878	blood:	n/a	n/a
41	EP300	chr10:98031061-98031745	T-47D	breast:	n/a	chr10:98031524-98031533
42	POLR2A	chr10:98030962-98033520	GM19193	blood:	n/a	n/a
43	PML	chr10:98031047-98031713	GM12878	blood:	n/a	n/a
44	EP300	chr10:98031082-98031803	T-47D	breast:	n/a	chr10:98031524-98031533
45	POLR2A	chr10:98021631-98034356	GM12891	blood:	n/a	n/a
46	POLR2A	chr10:98030958-98033548	Raji	blood:	n/a	n/a
47	ATF2	chr10:98030853-98031715	GM12878	blood:	n/a	n/a
48	RELA	chr10:98030932-98032243	GM19099	blood:	n/a	n/a
49	RELA	chr10:98030850-98031682	GM18526	blood:	n/a	n/a
50	MAX	chr10:98031083-98032351	GM12878	blood:	n/a	chr10:98031883-98031892 chr10:98031368-98031381

No.	Distal block	Cell Line	Cell type
1	chr10:97802645..97804655-chr10:98031643..98033202,2	MCF-7	breast:
2	chr10:97848840..97850347-chr10:98030578..98032838,2	MCF-7	breast:
3	chr10:98031417..98034385-chr10:98034757..98037553,2	MCF-7	breast:

Variant related genes	Relation type
BLNK	TF binding region
ENSG00000107443	Chromatin interaction
ENSG00000226688	Chromatin interaction

rs_ID	r²[population]
rs11813386	0.84[YRI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12252547	1.00[EUR][1000 genomes]
rs12258827	1.00[EUR][1000 genomes]
rs12260997	1.00[EUR][1000 genomes]
rs12261067	1.00[EUR][1000 genomes]
rs12268870	1.00[EUR][1000 genomes]
rs56746031	1.00[EUR][1000 genomes]
rs57155025	1.00[EUR][1000 genomes]
rs58744084	1.00[EUR][1000 genomes]
rs60349635	1.00[EUR][1000 genomes]
rs74153617	1.00[EUR][1000 genomes]
rs74153623	1.00[EUR][1000 genomes]
rs7916154	1.00[EUR][1000 genomes]

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98023600-98031800	Weak transcription	Small Intestine	intestine
2	chr10:98023800-98032000	Weak transcription	Spleen	Spleen
3	chr10:98026200-98033000	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr10:98028200-98032000	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
5	chr10:98028200-98032200	Active TSS	Brain Hippocampus Middle	brain
6	chr10:98029600-98032000	Weak transcription	Lung	lung
7	chr10:98029800-98031800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
8	chr10:98029800-98032000	Active TSS	GM12878-XiMat	blood
9	chr10:98030000-98032000	Weak transcription	Gastric	stomach
10	chr10:98030200-98031800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr10:98031000-98032200	Enhancers	Fetal Muscle Trunk	muscle
12	chr10:98031000-98032200	Enhancers	Psoas Muscle	Psoas
13	chr10:98031000-98033200	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
14	chr10:98031000-98034600	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr10:98031200-98031800	Enhancers	Fetal Muscle Leg	muscle
16	chr10:98031200-98031800	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr10:98031200-98032200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
18	chr10:98031200-98032400	Enhancers	Duodenum Smooth Muscle	Duodenum
19	chr10:98031200-98033200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr10:98031200-98033200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr10:98031200-98033200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr10:98031200-98033200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr10:98031200-98033400	Enhancers	Adipose Nuclei	Adipose
24	chr10:98031200-98033600	Enhancers	Placenta	Placenta
25	chr10:98031400-98031800	Weak transcription	Colonic Mucosa	Colon
26	chr10:98031400-98032000	Weak transcription	Esophagus	oesophagus
27	chr10:98031400-98032000	Weak transcription	Fetal Thymus	thymus
28	chr10:98031400-98032200	Weak transcription	Primary hematopoietic stem cells	blood
29	chr10:98031400-98032400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr10:98031400-98032800	Active TSS	Rectal Smooth Muscle	rectum
31	chr10:98031400-98032800	Enhancers	Skeletal Muscle Female	skeletal muscle
32	chr10:98031400-98033200	Flanking Active TSS	Primary B cells from cord blood	blood
33	chr10:98031400-98033200	Enhancers	Liver	Liver
34	chr10:98031400-98033200	Enhancers	Fetal Lung	lung
35	chr10:98031400-98033200	Enhancers	Stomach Mucosa	stomach
36	chr10:98031400-98033400	Flanking Active TSS	Primary B cells from peripheral blood	blood
37	chr10:98031400-98033600	Enhancers	Fetal Intestine Small	intestine
38	chr10:98031400-98034000	Enhancers	Primary monocytes fromperipheralblood	blood
39	chr10:98031400-98035600	Weak transcription	Colon Smooth Muscle	Colon
40	chr10:98031400-98035600	Weak transcription	Stomach Smooth Muscle	stomach
41	chr10:98031600-98032000	Weak transcription	Fetal Kidney	kidney
42	chr10:98031600-98032000	Enhancers	Pancreatic Islets	Pancreatic Islet
43	chr10:98031600-98032000	Enhancers	Skeletal Muscle Male	skeletal muscle
44	chr10:98031600-98032200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr10:98031600-98032400	Enhancers	Placenta Amnion	Placenta Amnion
46	chr10:98031600-98032600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr10:98031600-98032800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr10:98031600-98033000	Enhancers	Pancreas	Pancrea
49	chr10:98031600-98033200	Flanking Active TSS	Duodenum Mucosa	Duodenum
50	chr10:98031600-98033200	Flanking Active TSS	Rectal Mucosa Donor 29	rectum

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