Variant report

Variant	rs74153617
Chromosome Location	chr10:98057639-98057640
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11813386	1.00[EUR][1000 genomes]
rs12252547	1.00[EUR][1000 genomes]
rs12258827	1.00[EUR][1000 genomes]
rs12260997	1.00[EUR][1000 genomes]
rs12261067	1.00[EUR][1000 genomes]
rs12268870	1.00[EUR][1000 genomes]
rs56746031	1.00[EUR][1000 genomes]
rs57155025	1.00[EUR][1000 genomes]
rs58744084	1.00[EUR][1000 genomes]
rs60349635	1.00[EUR][1000 genomes]
rs74153623	1.00[EUR][1000 genomes]
rs7896411	1.00[EUR][1000 genomes]
rs7916154	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	esv2761620	chr10:98047045-98089749	Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98048600-98058800	Weak transcription	Primary hematopoietic stem cells	blood
2	chr10:98050600-98059200	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr10:98052800-98058400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr10:98053200-98059200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr10:98055200-98061000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr10:98055800-98058600	Weak transcription	Primary B cells from peripheral blood	blood
7	chr10:98055800-98058600	Weak transcription	Primary T cells from cord blood	blood
8	chr10:98055800-98058800	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr10:98055800-98059200	Weak transcription	GM12878-XiMat	blood
10	chr10:98056200-98058800	Weak transcription	Primary B cells from cord blood	blood
11	chr10:98056600-98057800	Enhancers	Brain Germinal Matrix	brain
12	chr10:98056800-98059000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
13	chr10:98056800-98062800	Enhancers	Primary T helper cells PMA-I stimulated	--
14	chr10:98057000-98059600	Enhancers	Primary T killer memory cells from peripheral blood	blood
15	chr10:98057200-98061800	Enhancers	Primary T helper cells fromperipheralblood	blood
16	chr10:98057400-98058000	Enhancers	Fetal Brain Male	brain
17	chr10:98057400-98058600	Genic enhancers	Dnd41	blood
18	chr10:98057400-98060000	Flanking Active TSS	Thymus	Thymus
19	chr10:98057400-98061200	Enhancers	Primary T helper naive cells from peripheral blood	blood
20	chr10:98057400-98062000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
21	chr10:98057600-98058000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
22	chr10:98057600-98063800	Enhancers	Fetal Thymus	thymus

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