Variant report

Variant	rs521787
Chromosome Location	chr10:98461369-98461370
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EBF1	chr10:98461320-98461634	GM12878	blood:	n/a	chr10:98461498-98461511 chr10:98461500-98461509 chr10:98461500-98461510
2	NFIC	chr10:98459317-98462197	GM12878	blood:	n/a	n/a
3	YY1	chr10:98461001-98461386	GM12878	blood:	n/a	n/a
4	WRNIP1	chr10:98459334-98461529	GM12878	blood:	n/a	n/a
5	RUNX3	chr10:98459745-98461474	GM12878	blood:	n/a	n/a
6	EP300	chr10:98460338-98461565	GM12878	blood:	n/a	chr10:98461360-98461374
7	BHLHE40	chr10:98459887-98461498	GM12878	blood:	n/a	n/a
8	CUX1	chr10:98460496-98461549	GM12878	blood:	n/a	n/a
9	POLR2A	chr10:98459187-98461519	GM12878	blood:	n/a	n/a
10	POLR2A	chr10:98459364-98462011	Raji	blood:	n/a	n/a
11	EP300	chr10:98459421-98461412	GM12878	blood:	n/a	chr10:98460331-98460345 chr10:98461360-98461374 chr10:98460325-98460339
12	POLR2A	chr10:98459244-98461479	GM12891	blood:	n/a	n/a
13	POLR2A	chr10:98459324-98461444	GM18505	blood:	n/a	n/a
14	RCOR1	chr10:98460111-98461495	GM12878	blood:	n/a	n/a
15	EBF1	chr10:98459445-98462487	GM12878	blood:	n/a	chr10:98461498-98461511 chr10:98460677-98460688 chr10:98460676-98460689 chr10:98461500-98461509 chr10:98461500-98461510
16	STAT5A	chr10:98459625-98461373	GM12878	blood:	n/a	chr10:98460336-98460347 chr10:98459772-98459780
17	PML	chr10:98459237-98461501	GM12878	blood:	n/a	n/a
18	POLR2A	chr10:98459295-98461537	GM12878	blood:	n/a	n/a
19	MTA3	chr10:98459295-98461582	GM12878	blood:	n/a	n/a
20	MTA3	chr10:98459210-98462170	GM12878	blood:	n/a	n/a
21	RUNX3	chr10:98459705-98461396	GM12878	blood:	n/a	n/a
22	POLR2A	chr10:98459217-98461414	GM12878	blood:	n/a	n/a
23	ATF2	chr10:98460309-98461370	GM12878	blood:	n/a	n/a
24	EBF1	chr10:98461311-98461571	GM12878	blood:	n/a	chr10:98461498-98461511 chr10:98461500-98461509 chr10:98461500-98461510
25	FOXA1	chr10:98461223-98461487	T-47D	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:98455056..98457632-chr10:98461226..98463080,2	K562	blood:

Variant related genes	Relation type
PIK3AP1	TF binding region

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs684211	0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv532232	chr10:98360775-99141797	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
3	nsv895910	chr10:98386483-98640994	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
4	nsv895911	chr10:98427049-98469693	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv508601	chr10:98437890-98534321	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98451200-98468400	Weak transcription	Pancreas	Pancrea
2	chr10:98456000-98469200	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr10:98457200-98478000	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr10:98460000-98462200	Strong transcription	Liver	Liver
5	chr10:98460600-98461400	Genic enhancers	Primary neutrophils fromperipheralblood	blood
6	chr10:98460600-98461600	Flanking Active TSS	Primary B cells from cord blood	blood
7	chr10:98460600-98462000	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr10:98460600-98470800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr10:98460600-98476600	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr10:98460600-98478400	Weak transcription	Duodenum Mucosa	Duodenum
11	chr10:98460800-98461600	Genic enhancers	Primary hematopoietic stem cells	blood
12	chr10:98460800-98461600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr10:98460800-98461600	Flanking Active TSS	GM12878-XiMat	blood
14	chr10:98460800-98465600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr10:98461000-98461600	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr10:98461000-98461600	Genic enhancers	Monocytes-CD14+_RO01746	blood
17	chr10:98461000-98462000	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
18	chr10:98461000-98468800	Weak transcription	Placenta	Placenta
19	chr10:98461200-98462000	Genic enhancers	Primary monocytes fromperipheralblood	blood
20	chr10:98461200-98462800	Enhancers	Primary B cells from peripheral blood	blood
21	chr10:98461200-98467000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr10:98461200-98468600	Weak transcription	Spleen	Spleen

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