Variant report

Variant	rs10786351
Chromosome Location	chr10:99246556-99246557
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:99245926..99248075-chr10:99252387..99254399,2	K562	blood:
2	chr10:99245187..99248138-chr10:99256409..99258187,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000155229	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10882937	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap]
rs10882939	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap]
rs11189244	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs17112814	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2275583	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap]
rs4917772	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7084687	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7893335	0.95[CHB][hapmap];0.81[JPT][hapmap]
rs7915501	0.95[CHB][hapmap];0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817777	chr10:99196035-99558169	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99211200-99246600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr10:99215400-99254600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr10:99227600-99246600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr10:99230800-99250400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr10:99237200-99254800	Weak transcription	Small Intestine	intestine
6	chr10:99237800-99248200	Weak transcription	Fetal Heart	heart
7	chr10:99238000-99250200	Weak transcription	Fetal Brain Male	brain
8	chr10:99238200-99249800	Weak transcription	Psoas Muscle	Psoas
9	chr10:99239200-99254600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr10:99239400-99257400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr10:99239600-99250400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr10:99240800-99249200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr10:99240800-99254600	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr10:99240800-99256000	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr10:99240800-99257400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr10:99241000-99250200	Weak transcription	Colon Smooth Muscle	Colon
17	chr10:99241000-99250600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr10:99241000-99254600	Weak transcription	K562	blood
19	chr10:99241200-99250000	Weak transcription	HSMMtube	muscle
20	chr10:99241200-99250400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr10:99241200-99250400	Weak transcription	Fetal Lung	lung
22	chr10:99241200-99250400	Weak transcription	Gastric	stomach
23	chr10:99241200-99250400	Weak transcription	Ovary	ovary
24	chr10:99241200-99253600	Weak transcription	Fetal Kidney	kidney
25	chr10:99241200-99254600	Weak transcription	Esophagus	oesophagus
26	chr10:99241200-99254800	Weak transcription	Stomach Mucosa	stomach
27	chr10:99241200-99256800	Weak transcription	Colonic Mucosa	Colon
28	chr10:99241200-99256800	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr10:99241400-99250400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr10:99241400-99250400	Weak transcription	Aorta	Aorta
31	chr10:99241400-99254200	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr10:99241800-99248000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
33	chr10:99241800-99248800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
34	chr10:99241800-99252800	Weak transcription	Lung	lung
35	chr10:99241800-99256400	Weak transcription	Pancreatic Islets	Pancreatic Islet
36	chr10:99242000-99250400	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr10:99242200-99249200	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr10:99242200-99250200	Weak transcription	Primary neutrophils fromperipheralblood	blood
39	chr10:99242200-99252600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr10:99242400-99248800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
41	chr10:99242400-99248800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr10:99242400-99250200	Weak transcription	Rectal Smooth Muscle	rectum
43	chr10:99243600-99248400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
44	chr10:99243600-99248800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr10:99243600-99249000	Weak transcription	NHDF-Ad	bronchial
46	chr10:99243600-99249200	Weak transcription	NHLF	lung
47	chr10:99243600-99250200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
48	chr10:99243600-99250600	Weak transcription	Liver	Liver
49	chr10:99243800-99248000	Weak transcription	Brain Angular Gyrus	brain
50	chr10:99243800-99248000	Weak transcription	Brain Substantia Nigra	brain

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