Variant report

Variant	rs10882937
Chromosome Location	chr10:99208609-99208610
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:99204257..99208828-chr10:99209002..99214217,10	MCF-7	breast:
2	chr10:99165638..99168564-chr10:99206419..99208887,2	K562	blood:
3	chr10:99207053..99209645-chr10:99370257..99372774,2	MCF-7	breast:
4	chr10:99206182..99209636-chr10:99215274..99218911,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000171307	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10786350	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10786351	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap]
rs10882936	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882939	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10882940	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10882943	0.91[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs10882944	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10882946	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11189233	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11189238	0.94[AFR][1000 genomes];0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11189244	0.82[CHB][hapmap];0.83[CHD][hapmap];0.80[JPT][hapmap]
rs17112814	0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2275583	0.93[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.83[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs29001322	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4917772	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59554205	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7084687	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72833970	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7893335	0.91[CHB][hapmap];0.86[CHD][hapmap]
rs7915501	0.91[CHB][hapmap];0.86[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817777	chr10:99196035-99558169	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99206400-99209000	Enhancers	Fetal Heart	heart
2	chr10:99206600-99208800	Enhancers	Primary T helper naive cells from peripheral blood	blood
3	chr10:99206600-99210800	Weak transcription	Esophagus	oesophagus
4	chr10:99206800-99208800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
5	chr10:99206800-99208800	Enhancers	Liver	Liver
6	chr10:99206800-99211000	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr10:99206800-99234200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr10:99207000-99208800	Enhancers	Brain Anterior Caudate	brain
9	chr10:99207000-99208800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr10:99207000-99210000	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr10:99207000-99210400	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr10:99207000-99210800	Weak transcription	Primary hematopoietic stem cells	blood
13	chr10:99207200-99208800	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr10:99207200-99210000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr10:99207200-99210000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr10:99207200-99210000	Weak transcription	Primary T cells from cord blood	blood
17	chr10:99207200-99210000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr10:99207200-99210600	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr10:99207200-99210600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr10:99207200-99210600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr10:99207200-99210800	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr10:99207200-99211000	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr10:99207200-99211400	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr10:99207200-99211400	Weak transcription	Primary neutrophils fromperipheralblood	blood
25	chr10:99207200-99211400	Weak transcription	Primary B cells from cord blood	blood
26	chr10:99207200-99211400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
27	chr10:99207200-99211600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr10:99207200-99212000	Weak transcription	HSMMtube	muscle
29	chr10:99207200-99212400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr10:99207200-99214800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr10:99207200-99215200	Weak transcription	Pancreatic Islets	Pancreatic Islet
32	chr10:99207200-99215400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr10:99207200-99216800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr10:99207400-99208800	Enhancers	Dnd41	blood
35	chr10:99207400-99209000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr10:99207400-99209000	Enhancers	Hela-S3	cervix
37	chr10:99207400-99209000	Enhancers	HepG2	liver
38	chr10:99207400-99210000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr10:99207400-99210000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr10:99207400-99210000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr10:99207400-99210000	Weak transcription	HMEC	breast
42	chr10:99207400-99210200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr10:99207400-99210200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr10:99207400-99210200	Weak transcription	Psoas Muscle	Psoas
45	chr10:99207400-99210400	Weak transcription	Brain Substantia Nigra	brain
46	chr10:99207400-99210400	Weak transcription	Fetal Brain Female	brain
47	chr10:99207400-99210400	Weak transcription	Fetal Thymus	thymus
48	chr10:99207400-99210400	Weak transcription	Lung	lung
49	chr10:99207400-99210400	Weak transcription	HSMM	muscle
50	chr10:99207400-99210600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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