Variant report

Variant	rs11189233
Chromosome Location	chr10:99242528-99242529
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10786350	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10882936	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10882937	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10882939	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10882940	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10882943	0.99[ASN][1000 genomes]
rs10882944	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10882946	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11189238	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs17112814	0.83[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs2275583	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs29001322	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4917772	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59554205	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7084687	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72833970	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7893335	0.85[ASN][1000 genomes]
rs7915501	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817777	chr10:99196035-99558169	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99210000-99243800	Strong transcription	Primary T cells from cord blood	blood
2	chr10:99210000-99243800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
3	chr10:99210000-99244000	Strong transcription	Fetal Stomach	stomach
4	chr10:99210000-99244200	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr10:99210200-99243800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr10:99210400-99243600	Strong transcription	Primary monocytes fromperipheralblood	blood
7	chr10:99210400-99244800	Strong transcription	Fetal Thymus	thymus
8	chr10:99210600-99243800	Strong transcription	Duodenum Mucosa	Duodenum
9	chr10:99210600-99244200	Strong transcription	Placenta	Placenta
10	chr10:99210800-99243800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr10:99210800-99244000	Strong transcription	Sigmoid Colon	Sigmoid Colon
12	chr10:99210800-99246000	Strong transcription	Primary B cells from peripheral blood	blood
13	chr10:99211000-99243800	Strong transcription	Primary T helper cells fromperipheralblood	blood
14	chr10:99211000-99246400	Strong transcription	Dnd41	blood
15	chr10:99211200-99244800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr10:99211200-99246200	Strong transcription	Primary T cells fromperipheralblood	blood
17	chr10:99211200-99246600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr10:99214400-99246400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr10:99214600-99242800	Strong transcription	Fetal Muscle Leg	muscle
20	chr10:99214600-99243800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr10:99214600-99243800	Strong transcription	Stomach Smooth Muscle	stomach
22	chr10:99214800-99243800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr10:99215200-99243800	Strong transcription	Primary T helper cells PMA-I stimulated	--
24	chr10:99215400-99243800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr10:99215400-99254600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr10:99216800-99243800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr10:99218200-99244000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr10:99224200-99245000	Strong transcription	Fetal Intestine Small	intestine
29	chr10:99224400-99244800	Strong transcription	Fetal Intestine Large	intestine
30	chr10:99227600-99246600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr10:99230800-99250400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr10:99232200-99243600	Strong transcription	Liver	Liver
33	chr10:99232200-99244200	Strong transcription	Primary B cells from cord blood	blood
34	chr10:99232600-99244000	Strong transcription	Fetal Brain Female	brain
35	chr10:99233400-99246400	Strong transcription	GM12878-XiMat	blood
36	chr10:99235400-99243800	Strong transcription	Rectal Mucosa Donor 29	rectum
37	chr10:99236200-99242600	Strong transcription	Adipose Nuclei	Adipose
38	chr10:99236200-99243600	Strong transcription	NHDF-Ad	bronchial
39	chr10:99237000-99243400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr10:99237000-99243800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr10:99237000-99243800	Strong transcription	Osteobl	bone
42	chr10:99237200-99243000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr10:99237200-99254800	Weak transcription	Small Intestine	intestine
44	chr10:99237800-99248200	Weak transcription	Fetal Heart	heart
45	chr10:99238000-99250200	Weak transcription	Fetal Brain Male	brain
46	chr10:99238200-99249800	Weak transcription	Psoas Muscle	Psoas
47	chr10:99239000-99242600	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr10:99239200-99254600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr10:99239400-99257400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
50	chr10:99239600-99244200	Strong transcription	Primary hematopoietic stem cells	blood

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