Variant report

Variant	rs10882936
Chromosome Location	chr10:99207656-99207657
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:7)
CpG islands
(count:0)
Chromatin interactive
region (count:15)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:7 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUND	chr10:99207642-99208380	T-47D	breast:	n/a	chr10:99207931-99207943
2	POLR2A	chr10:99207523-99207724	HepG2	liver:	n/a	n/a
3	GATA3	chr10:99207653-99208360	T-47D	breast:	n/a	n/a
4	JUND	chr10:99207590-99208377	T-47D	breast:	n/a	chr10:99207931-99207943
5	ESR1	chr10:99207633-99208237	T-47D	breast:	n/a	n/a
6	SIN3AK20	chr10:99207581-99208388	MCF-7	breast:	n/a	n/a
7	FOXA1	chr10:99207601-99208304	T-47D	breast:	n/a	n/a

No data

(count:15 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:99205859..99207982-chr10:99208741..99212627,5	K562	blood:
2	chr10:99204257..99208828-chr10:99209002..99214217,10	MCF-7	breast:
3	chr10:99165638..99168564-chr10:99206419..99208887,2	K562	blood:
4	chr10:99205739..99208326-chr10:99215340..99218229,2	K562	blood:
5	chr10:99204868..99207758-chr10:99220730..99223345,2	MCF-7	breast:
6	chr10:99205729..99207747-chr10:99256104..99259230,4	MCF-7	breast:
7	chr10:99205743..99208350-chr10:99330121..99333769,3	MCF-7	breast:
8	chr10:99204978..99208381-chr10:99211777..99214461,3	MCF-7	breast:
9	chr10:99187101..99190236-chr10:99202891..99208015,7	MCF-7	breast:
10	chr10:99158578..99161453-chr10:99205742..99208123,2	MCF-7	breast:
11	chr10:99207053..99209645-chr10:99370257..99372774,2	MCF-7	breast:
12	chr10:99206182..99209636-chr10:99215274..99218911,5	MCF-7	breast:
13	chr10:99204416..99207741-chr10:99255231..99259773,5	K562	blood:
14	chr10:99205859..99207837-chr10:99208741..99212627,4	K562	blood:
15	chr10:99205621..99207743-chr10:99257584..99260294,2	MCF-7	breast:

No data

Variant related genes	Relation type
EXOSC1	TF binding region
ZDHHC16	TF binding region
ENSG00000171314	Chromatin interaction
ENSG00000165887	Chromatin interaction
ENSG00000052749	Chromatin interaction
ENSG00000171307	Chromatin interaction
ENSG00000155229	Chromatin interaction
ENSG00000231970	Chromatin interaction
ENSG00000165886	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10786350	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10882937	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882939	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10882940	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10882943	0.91[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs10882944	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10882946	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11189233	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11189238	0.94[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs17112814	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2275583	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs29001322	0.88[AFR][1000 genomes];0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4917772	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59554205	0.89[AFR][1000 genomes];0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7084687	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72833970	0.93[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817777	chr10:99196035-99558169	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99205200-99207800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr10:99206400-99207800	Flanking Active TSS	Fetal Lung	lung
3	chr10:99206400-99209000	Enhancers	Fetal Heart	heart
4	chr10:99206600-99208200	Enhancers	Stomach Mucosa	stomach
5	chr10:99206600-99208800	Enhancers	Primary T helper naive cells from peripheral blood	blood
6	chr10:99206600-99210800	Weak transcription	Esophagus	oesophagus
7	chr10:99206800-99207800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr10:99206800-99207800	Weak transcription	Fetal Kidney	kidney
9	chr10:99206800-99208000	Enhancers	Fetal Intestine Small	intestine
10	chr10:99206800-99208800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr10:99206800-99208800	Enhancers	Liver	Liver
12	chr10:99206800-99211000	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr10:99206800-99234200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr10:99207000-99207800	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr10:99207000-99208000	Enhancers	Adipose Nuclei	Adipose
16	chr10:99207000-99208000	Enhancers	Right Ventricle	heart
17	chr10:99207000-99208200	Enhancers	Colon Smooth Muscle	Colon
18	chr10:99207000-99208400	Enhancers	Placenta	Placenta
19	chr10:99207000-99208400	Enhancers	Right Atrium	heart
20	chr10:99207000-99208600	Enhancers	Fetal Muscle Trunk	muscle
21	chr10:99207000-99208800	Enhancers	Brain Anterior Caudate	brain
22	chr10:99207000-99208800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
23	chr10:99207000-99210000	Weak transcription	Monocytes-CD14+_RO01746	blood
24	chr10:99207000-99210400	Weak transcription	Primary monocytes fromperipheralblood	blood
25	chr10:99207000-99210800	Weak transcription	Primary hematopoietic stem cells	blood
26	chr10:99207200-99207800	Enhancers	Duodenum Mucosa	Duodenum
27	chr10:99207200-99208000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
28	chr10:99207200-99208000	Enhancers	Primary T helper cells fromperipheralblood	blood
29	chr10:99207200-99208000	Enhancers	Primary T killer memory cells from peripheral blood	blood
30	chr10:99207200-99208000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
31	chr10:99207200-99208000	Enhancers	Rectal Mucosa Donor 31	rectum
32	chr10:99207200-99208200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr10:99207200-99208200	Enhancers	Breast Myoepithelial Primary Cells	Breast
34	chr10:99207200-99208200	Enhancers	Muscle Satellite Cultured Cells	--
35	chr10:99207200-99208200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr10:99207200-99208200	Enhancers	Fetal Brain Male	brain
37	chr10:99207200-99208200	Genic enhancers	Fetal Muscle Leg	muscle
38	chr10:99207200-99208200	Enhancers	Rectal Smooth Muscle	rectum
39	chr10:99207200-99208200	Enhancers	Skeletal Muscle Male	skeletal muscle
40	chr10:99207200-99208200	Enhancers	A549	lung
41	chr10:99207200-99208200	Enhancers	Osteobl	bone
42	chr10:99207200-99208400	Enhancers	Fetal Stomach	stomach
43	chr10:99207200-99208400	Enhancers	Gastric	stomach
44	chr10:99207200-99208400	Enhancers	Left Ventricle	heart
45	chr10:99207200-99208600	Enhancers	Stomach Smooth Muscle	stomach
46	chr10:99207200-99208800	Enhancers	Skeletal Muscle Female	skeletal muscle
47	chr10:99207200-99210000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr10:99207200-99210000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
49	chr10:99207200-99210000	Weak transcription	Primary T cells from cord blood	blood
50	chr10:99207200-99210000	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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