Variant report

Variant	rs10882946
Chromosome Location	chr10:99253726-99253727
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:99248992..99255448-chr10:99256116..99258644,11	K562	blood:
2	chr10:99241445..99243477-chr10:99252731..99255030,2	MCF-7	breast:
3	chr10:99248310..99253998-chr10:99255944..99258497,7	MCF-7	breast:
4	chr10:99245926..99248075-chr10:99252387..99254399,2	K562	blood:
5	chr10:99252543..99254931-chr10:99399634..99401177,2	MCF-7	breast:
6	chr10:99248971..99251809-chr10:99252643..99255193,3	K562	blood:
7	chr10:99250054..99254215-chr10:99255711..99258162,4	K562	blood:
8	chr10:99247476..99249114-chr10:99251586..99254225,2	MCF-7	breast:
9	chr10:99253255..99256106-chr10:99256455..99258608,4	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000155252	Chromatin interaction
ENSG00000165886	Chromatin interaction
ENSG00000264677	Chromatin interaction
ENSG00000155229	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10786350	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10882936	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10882937	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10882939	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10882940	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10882943	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10882944	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11189233	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11189238	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs11189244	0.81[ASN][1000 genomes]
rs17112814	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2275583	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs29001322	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4917772	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59554205	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7084687	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72833970	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7893335	0.86[ASN][1000 genomes]
rs7915501	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817777	chr10:99196035-99558169	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99215400-99254600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr10:99237200-99254800	Weak transcription	Small Intestine	intestine
3	chr10:99239200-99254600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr10:99239400-99257400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr10:99240800-99254600	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr10:99240800-99256000	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr10:99240800-99257400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr10:99241000-99254600	Weak transcription	K562	blood
9	chr10:99241200-99254600	Weak transcription	Esophagus	oesophagus
10	chr10:99241200-99254800	Weak transcription	Stomach Mucosa	stomach
11	chr10:99241200-99256800	Weak transcription	Colonic Mucosa	Colon
12	chr10:99241200-99256800	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr10:99241400-99254200	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr10:99241800-99256400	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr10:99243800-99254000	Weak transcription	Right Ventricle	heart
16	chr10:99243800-99254000	Weak transcription	Spleen	Spleen
17	chr10:99243800-99254000	Weak transcription	HMEC	breast
18	chr10:99243800-99254400	Weak transcription	NHEK	skin
19	chr10:99243800-99254800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr10:99243800-99255000	Weak transcription	Duodenum Mucosa	Duodenum
21	chr10:99243800-99256000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr10:99244000-99254600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr10:99244000-99254600	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr10:99244200-99254400	Weak transcription	Primary hematopoietic stem cells	blood
25	chr10:99244200-99257200	Weak transcription	Placenta	Placenta
26	chr10:99244800-99254600	Weak transcription	Fetal Intestine Large	intestine
27	chr10:99245000-99255600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr10:99245200-99254000	Weak transcription	Thymus	Thymus
29	chr10:99246400-99254000	Weak transcription	Dnd41	blood
30	chr10:99246800-99254000	Weak transcription	Hela-S3	cervix
31	chr10:99250200-99254200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr10:99250400-99254200	Weak transcription	Primary T cells from cord blood	blood
33	chr10:99250600-99254200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
34	chr10:99250600-99256800	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr10:99250800-99253800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
36	chr10:99250800-99254000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr10:99250800-99254000	Weak transcription	Pancreas	Pancrea
38	chr10:99250800-99254000	Weak transcription	Osteobl	bone
39	chr10:99250800-99254600	Weak transcription	HUVEC	blood vessel
40	chr10:99250800-99254800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr10:99250800-99256600	Weak transcription	NHLF	lung
42	chr10:99250800-99256800	Weak transcription	Aorta	Aorta
43	chr10:99250800-99257400	Weak transcription	Ovary	ovary
44	chr10:99251000-99253800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
45	chr10:99251000-99253800	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr10:99251000-99253800	Weak transcription	Stomach Smooth Muscle	stomach
47	chr10:99251000-99254000	Weak transcription	Adipose Nuclei	Adipose
48	chr10:99251000-99254000	Weak transcription	Psoas Muscle	Psoas
49	chr10:99251000-99254400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
50	chr10:99251000-99254400	Weak transcription	Fetal Lung	lung

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