Variant report

Variant	rs10786354
Chromosome Location	chr10:99292272-99292273
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:99280106..99282140-chr10:99290558..99292747,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10882955	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7074782	1.00[ASN][1000 genomes]
rs7074898	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817777	chr10:99196035-99558169	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv1036494	chr10:99267639-99345207	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
3	nsv7508	chr10:99285375-99330501	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99275000-99293800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr10:99277800-99301800	Weak transcription	Gastric	stomach
3	chr10:99278000-99302600	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr10:99278200-99298800	Weak transcription	Aorta	Aorta
5	chr10:99278400-99301800	Weak transcription	Spleen	Spleen
6	chr10:99278600-99300200	Weak transcription	Stomach Smooth Muscle	stomach
7	chr10:99281400-99302200	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr10:99282200-99301800	Weak transcription	Pancreas	Pancrea
9	chr10:99282400-99298200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr10:99282800-99292800	Weak transcription	HSMMtube	muscle
11	chr10:99282800-99299400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr10:99285000-99293000	Weak transcription	Brain Substantia Nigra	brain
13	chr10:99285200-99298600	Weak transcription	Right Atrium	heart
14	chr10:99286000-99293600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr10:99286200-99299200	Weak transcription	Ovary	ovary
16	chr10:99286400-99293800	Weak transcription	Psoas Muscle	Psoas
17	chr10:99287200-99298200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr10:99289800-99293000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr10:99290000-99292600	Weak transcription	Brain Hippocampus Middle	brain
20	chr10:99290000-99292800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr10:99290000-99298200	Weak transcription	Adipose Nuclei	Adipose
22	chr10:99290000-99299400	Weak transcription	Right Ventricle	heart
23	chr10:99290200-99292800	Weak transcription	A549	lung
24	chr10:99291000-99294200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr10:99291000-99295000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr10:99291000-99295000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr10:99291200-99292600	Weak transcription	HSMM	muscle
28	chr10:99291200-99293400	Enhancers	HUES6 Cell Line	embryonic stem cell
29	chr10:99291200-99293400	Enhancers	Osteobl	bone
30	chr10:99291200-99295000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr10:99291400-99292800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr10:99291400-99293000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr10:99291400-99293000	Enhancers	NHLF	lung
34	chr10:99291400-99293200	Enhancers	iPS-15b Cell Line	embryonic stem cell
35	chr10:99291400-99293400	Enhancers	H1 Cell Line	embryonic stem cell
36	chr10:99291400-99293400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr10:99291400-99294200	Enhancers	Placenta Amnion	Placenta Amnion
38	chr10:99291400-99295000	Enhancers	Fetal Muscle Trunk	muscle
39	chr10:99291600-99292600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr10:99291600-99292600	Weak transcription	HUES48 Cell Line	embryonic stem cell
41	chr10:99291600-99292600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
42	chr10:99291600-99292600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr10:99291600-99294200	Enhancers	Fetal Muscle Leg	muscle
44	chr10:99291800-99292400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr10:99291800-99293000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
46	chr10:99291800-99293000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
47	chr10:99291800-99295000	Enhancers	Skeletal Muscle Female	skeletal muscle
48	chr10:99291800-99297800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr10:99292000-99292400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr10:99292000-99292400	Weak transcription	Muscle Satellite Cultured Cells	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links