Variant report

Variant	rs7074782
Chromosome Location	chr10:99286223-99286224
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10786354	1.00[ASN][1000 genomes]
rs10786357	0.92[EUR][1000 genomes]
rs10882955	1.00[ASN][1000 genomes]
rs1417409	0.92[EUR][1000 genomes]
rs2153546	0.92[EUR][1000 genomes]
rs4244322	0.92[EUR][1000 genomes]
rs4917775	0.92[EUR][1000 genomes]
rs4919111	0.92[EUR][1000 genomes]
rs7074898	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7081548	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817777	chr10:99196035-99558169	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv1036494	chr10:99267639-99345207	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
3	nsv7508	chr10:99285375-99330501	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99275000-99293800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr10:99277800-99301800	Weak transcription	Gastric	stomach
3	chr10:99278000-99302600	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr10:99278200-99298800	Weak transcription	Aorta	Aorta
5	chr10:99278400-99289600	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr10:99278400-99301800	Weak transcription	Spleen	Spleen
7	chr10:99278600-99300200	Weak transcription	Stomach Smooth Muscle	stomach
8	chr10:99279800-99287200	Enhancers	Lung	lung
9	chr10:99281200-99291400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr10:99281400-99302200	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr10:99282200-99289400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr10:99282200-99289600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr10:99282200-99301800	Weak transcription	Pancreas	Pancrea
14	chr10:99282400-99291200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr10:99282400-99298200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr10:99282800-99292800	Weak transcription	HSMMtube	muscle
17	chr10:99282800-99299400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr10:99284400-99287600	Enhancers	HepG2	liver
19	chr10:99284600-99286400	Enhancers	Psoas Muscle	Psoas
20	chr10:99284800-99289400	Weak transcription	Esophagus	oesophagus
21	chr10:99284800-99291800	Weak transcription	Brain Anterior Caudate	brain
22	chr10:99284800-99292000	Weak transcription	Brain Cingulate Gyrus	brain
23	chr10:99285000-99286800	Weak transcription	Left Ventricle	heart
24	chr10:99285000-99289400	Weak transcription	Right Ventricle	heart
25	chr10:99285000-99291000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr10:99285000-99291400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr10:99285000-99293000	Weak transcription	Brain Substantia Nigra	brain
28	chr10:99285200-99289600	Weak transcription	Brain Hippocampus Middle	brain
29	chr10:99285200-99298600	Weak transcription	Right Atrium	heart
30	chr10:99285600-99286400	Enhancers	Adipose Nuclei	Adipose
31	chr10:99285800-99286600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr10:99286000-99293600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr10:99286200-99289400	Weak transcription	A549	lung
34	chr10:99286200-99291400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr10:99286200-99291800	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr10:99286200-99299200	Weak transcription	Ovary	ovary

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